Amep

This version fixes many important bugs of version 2.0.0 and now allows to
efficiently use the new HDF5-based data format. The loading of the data has
been improved significantly and is robust against data loss. With this version,
it is also possible to install **AMEP** via `pip`.

New features

* `pip` support added (KS)
* possibility to add insets to a plot implemented (KS)
* `axiscolor` option added to `format_axis` (KS)
* `.h5amep` files now also store AMEP version for backwards compatibility (LH)
* non-LaTeX mode for plots implemented (KD)
* `get_data` method improved; allows individual keys and wildcard characters now (LH)
* energy functions added for energy calculations (KD)
* sort particles by id during loading (KD)
* general evaluation function added (KD)
* `frame.get_torque` implemented (LH)

Bug fixes

* bug in adding scripts to trajectory objects fixed (LH)
* `time_average` improved (KD)
* bug in `spatial_cor` fixed (LH)
* bug in reader objects related to uncomplete dump files fixed (LH)
* bug in `MSD` fixed - now checks if required data available (LH)
* data loading backend improved (KD, LH)

Contributors

* Lukas Hecht (LH)
* Kay-Robert Dormann (KD)
* Kai Luca Spanheimer (KS)

This is the new **AMEP** version which includes full HDF5 support and uses
HDF5 files in the backend.

New features

* new backend with full HDF5 support
* velocity autocorrelation function added
* orientational autocorrelation function added

Bug fixes

* improved calculation of structure factors

Deprecation and removals

* loading of previous `.pkl` trajectory file format not supported anymore

Contributors

* Lukas Hecht

New features

* fast mode for 2d structure factor implemented
* `replace_frame` added to BaseTrajectory
* cluster-resolved kinetic temperature added
* real fft and spectrum added
* axis line width and tick width added to `amep.plot.format_axis`
* cluster-resolved msd added
* `linear_mappable` added
* radius of gyration added
* `get_ids()` added to BaseFrame
* `in_circle` added
* cluster-resolved calculation of the number of next neighbors added
* `ClusterFraction` added

Bug fixes

* small bug fixed in `pbc.pbc_points`
* bug in `traj.get_forces()` fixed
* bug in loading LAMMPS data fixed
* saving results of evaluate objects now possible with user-defined file name

Contributors

* Lukas Hecht

This version includes small bug fixes and improvements.

Contributors

* Lukas Hecht

This is the first complete **AMEP** version ready to be shared with our group
members.

Contributors
* Lukas Hecht