Handle VCF data column being called Otherinfo1 instead of Otherinfo
0.4.14
0.4.13
Fix some broken requirements that were pulling in versions with breaking changes. Replace `pd.io.common` with `pd.errors`. Add experimental support for using `wecall` as a variant caller.
0.4.11
- fix issues when a reference genome without `chr` prefix was used together with Annovar indices that did have a `chr` prefix - update deprecated code - update documentation
0.4.9
- add support for MIPGEN's `picked_mips.txt` file - support MIPGEN probes with SNPs (probes `geneAex1_SNP_a` and `geneAex1_SNP_b` will be merged into a single probe called `geneAex1`) - output a more detailed error message when no matching reads were found - add tests
0.4.8
- Add support for custom aligners/variant callers - Change default variant caller to GATK - Add prefix option for Picard tools - Fix crash if no variants found - Add CircleCI for automated testing - Add automated tests for variant merging, FGFR2/TLK2 tutorials