Biolink-model

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add domain to biolink:type to help KGX recognize it as a node property. by sierra-moxon in https://github.com/biolink/biolink-model/pull/1221

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add entity as a domain of name by sierra-moxon in https://github.com/biolink/biolink-model/pull/1208
fix the regex pattern used to check for the biolink:category CURIE by vemonet in https://github.com/biolink/biolink-model/pull/1213
add SHACL gen to the `Makefile` by vemonet in https://github.com/biolink/biolink-model/pull/1214
update doc to use curie form of predicates by sierra-moxon in https://github.com/biolink/biolink-model/pull/1209
make type slot multivalued by vincentvialard in https://github.com/biolink/biolink-model/pull/1212
remove cycle in permissible values, fixes 1215, remove degradation from abundance hierarchy in permissible values, fixes 1206 by sierra-moxon in https://github.com/biolink/biolink-model/pull/1217
create `publication type` slot to fix SHACL validation and avoid confusion by vemonet in https://github.com/biolink/biolink-model/pull/1218
add grouping class for qualifiers, add subset translator, fix range o… by sierra-moxon in https://github.com/biolink/biolink-model/pull/1219

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documentation consistency updates and minor bug fixes
update dependencies

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adding more predicate mappings, refactored location and naming conventions here to remove "deprecated"
some opposite/inverse refactoring
loosened the domain of ameliorates predicate to include ClinicalEntities
added several slots to a variety of association classes
refactored build so that pydantic classes are generated and pypi release is automatic

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remove deprecated classes, slots
add deprecated predicate mappings to predicate_mappings.yaml
refine documentation with regard to associations, add several chemical->gene examples
general cleanup and maintenance

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add missing inverses or missing symmetric properties
add explicit mappings for phenotype and anatomical ontologies
add UMLS as an id prefix for requested class