Brainglobe-atlasapi

What's Changed
* Schedule tests to run weekly by IgorTatarnikov in https://github.com/brainglobe/brainglobe-atlasapi/pull/412
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/brainglobe-atlasapi/pull/414
* updated age of cavefish atlas based on correction by author by PolarBean in https://github.com/brainglobe/brainglobe-atlasapi/pull/415
* Atlas packaging template by PolarBean in https://github.com/brainglobe/brainglobe-atlasapi/pull/400
* Make list atlas function more robust by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/417
* Add praire vole atlas packaging script by sacha091 in https://github.com/brainglobe/brainglobe-atlasapi/pull/336
* Deal with downloaded atlases with _v in the name by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/419

New Contributors
* sacha091 made their first contribution in https://github.com/brainglobe/brainglobe-atlasapi/pull/336

**Full Changelog**: https://github.com/brainglobe/brainglobe-atlasapi/compare/v2.0.9...v2.0.10

What's Changed
* update waxholm to newest version by PolarBean in https://github.com/brainglobe/brainglobe-atlasapi/pull/395
* Allen Human brain incorrectly listed as 100 micron by PolarBean in https://github.com/brainglobe/brainglobe-atlasapi/pull/398
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/brainglobe-atlasapi/pull/401
* Create `.brainglobe` dir if it doesn't exist when fetching atlas versions by IgorTatarnikov in https://github.com/brainglobe/brainglobe-atlasapi/pull/402


**Full Changelog**: https://github.com/brainglobe/brainglobe-atlasapi/compare/v2.0.8...v2.0.9

What's Changed
* Add cavefish atlas :fish: by alessandrofelder in https://github.com/brainglobe/brainglobe-atlasapi/pull/277
* add cavefish to readme by alessandrofelder in https://github.com/brainglobe/brainglobe-atlasapi/pull/312
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/brainglobe-atlasapi/pull/317
* Standardise contact information in readme by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/320
* Remove template script by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/325
* Ensure no allen_cord meshes are black by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/328
* Fix failing test by always using the same file from GIN by IgorTatarnikov in https://github.com/brainglobe/brainglobe-atlasapi/pull/329
* Script to generate Allen mouse brain atlas with barrel annotations by abisi in https://github.com/brainglobe/brainglobe-atlasapi/pull/313
* Fixed spelling, grammatical and formatting errors, and removed empty code box. by kjungwoo5 in https://github.com/brainglobe/brainglobe-atlasapi/pull/335
* initial Axolotl Atlas Implementation by saimaabdus19 in https://github.com/brainglobe/brainglobe-atlasapi/pull/327
* use capital letter of each word for axolotl main structures by alessandrofelder in https://github.com/brainglobe/brainglobe-atlasapi/pull/343
* Update atlas list by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/345
* Add Axolotl Pooch hash by saimaabdus19 in https://github.com/brainglobe/brainglobe-atlasapi/pull/347
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/brainglobe-atlasapi/pull/346
* Corrected orientation of the axolotl atlas by saimaabdus19 in https://github.com/brainglobe/brainglobe-atlasapi/pull/348
* Fixing admba by viktorpm in https://github.com/brainglobe/brainglobe-atlasapi/pull/322
* Removal of spurious pixels by saimaabdus19 in https://github.com/brainglobe/brainglobe-atlasapi/pull/349
* modal-filter annotations before meshing by alessandrofelder in https://github.com/brainglobe/brainglobe-atlasapi/pull/350
* merge atlas_link and atlas_file_url by alessandrofelder in https://github.com/brainglobe/brainglobe-atlasapi/pull/352
* add axolotl to readme by alessandrofelder in https://github.com/brainglobe/brainglobe-atlasapi/pull/353
* Standardise bullet formatting to remove extra whitespace by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/355
* created table for atlases by PolarBean in https://github.com/brainglobe/brainglobe-atlasapi/pull/357
* fixed bug where progress bar didn't update properly by PolarBean in https://github.com/brainglobe/brainglobe-atlasapi/pull/369
* Loading atlas with no Internet by saarah815 in https://github.com/brainglobe/brainglobe-atlasapi/pull/358

New Contributors
* abisi made their first contribution in https://github.com/brainglobe/brainglobe-atlasapi/pull/313
* kjungwoo5 made their first contribution in https://github.com/brainglobe/brainglobe-atlasapi/pull/335
* saimaabdus19 made their first contribution in https://github.com/brainglobe/brainglobe-atlasapi/pull/327
* saarah815 made their first contribution in https://github.com/brainglobe/brainglobe-atlasapi/pull/358

**Full Changelog**: https://github.com/brainglobe/brainglobe-atlasapi/compare/v2.0.7...v2.0.8

Dependency Slimming

Main purpose of this release is a number of small fixes to atlases, and slimming down of the dependencies of this package.

If you are only interested in the AtlasAPI, a default install will no longer fetch the dependencies that are required for generating a new atlas. If you were previously using this package to generate atlases, you will need to install it with the optional `atlasgen` dependency.

What's Changed
* Return `brainglobe list` in alphabetical order by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/298
* Return "Outside atlas" rather than key error by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/299
* Remove slow test marker by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/300
* Cache atlases to speed up CI by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/301
* Fixing human atlas script by viktorpm in https://github.com/brainglobe/brainglobe-atlasapi/pull/290
* Fix AZBA by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/305
* fixing kim dev atlases by viktorpm in https://github.com/brainglobe/brainglobe-atlasapi/pull/304
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/brainglobe-atlasapi/pull/308
* Update supported Python versions by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/309
* Move `pymcubes` to an optional dependency. by willGraham01 in https://github.com/brainglobe/brainglobe-atlasapi/pull/310


**Full Changelog**: https://github.com/brainglobe/brainglobe-atlasapi/compare/v2.0.6...v2.0.7

What's Changed
* add codecov token by K-Meech in https://github.com/brainglobe/brainglobe-atlasapi/pull/269
* run CI on both types of Mac by alessandrofelder in https://github.com/brainglobe/brainglobe-atlasapi/pull/272
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/brainglobe-atlasapi/pull/278
* Fixes to Perens and Kim mouse atlases by viktorpm in https://github.com/brainglobe/brainglobe-atlasapi/pull/271
* Fix orientation issue in perens lsfm atlas by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/283
* Minor fixes to the atlas update workflow by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/287
* Update use of brainio to brainglobe-utils by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/288

New Contributors
* K-Meech made their first contribution in https://github.com/brainglobe/brainglobe-atlasapi/pull/269

**Full Changelog**: https://github.com/brainglobe/brainglobe-atlasapi/compare/v2.0.5...v2.0.6

What's Changed
* restore entrypoint by alessandrofelder in https://github.com/brainglobe/brainglobe-atlasapi/pull/264
* add two simple additional validation functions by alessandrofelder in https://github.com/brainglobe/brainglobe-atlasapi/pull/261


**Full Changelog**: https://github.com/brainglobe/brainglobe-atlasapi/compare/v2.0.4...v2.0.5