Brainglobe-atlasapi

Dependency Updates

Removes unused `brainio` dependency and removes duplicate entries that are present in pyproject.toml.

What's Changed
* Remove duplicate dependencies in pyproject by willGraham01 in https://github.com/brainglobe/brainglobe-atlasapi/pull/258


**Full Changelog**: https://github.com/brainglobe/brainglobe-atlasapi/compare/v2.0.3...v2.0.4

Removes `brainglobe-utils` circular dependency

Removes this package's un-necessary dependency on `brainglobe-utils` by retiring a function that is no longer in use across the BrainGlobe tool-suite.

What's Changed
* remove load_labelled_volume by alessandrofelder in https://github.com/brainglobe/brainglobe-atlasapi/pull/257

**Full Changelog**: https://github.com/brainglobe/brainglobe-atlasapi/compare/v2.0.2...v2.0.3

What's Changed
* testing and fixing outdated atlas generation scripts by viktorpm in https://github.com/brainglobe/brainglobe-atlasapi/pull/249
* Fixed broken link in the add atlas readme. by PolarBean in https://github.com/brainglobe/brainglobe-atlasapi/pull/252
* Fixing princeton_mouse atlas mesh by viktorpm in https://github.com/brainglobe/brainglobe-atlasapi/pull/253
* fix metadata key by alessandrofelder in https://github.com/brainglobe/brainglobe-atlasapi/pull/255

New Contributors
* viktorpm made their first contribution in https://github.com/brainglobe/brainglobe-atlasapi/pull/249
* PolarBean made their first contribution in https://github.com/brainglobe/brainglobe-atlasapi/pull/252

**Full Changelog**: https://github.com/brainglobe/brainglobe-atlasapi/compare/v2.0.1...v2.0.2

Patch unnecessary `brainglobe-utils` dependency

The package metadata was fetching `brainglobe-utils`, however this package does not depend on it.

What's Changed
* Remove brainglobe-utils dependency that we don't need nor use by willGraham01 in https://github.com/brainglobe/brainglobe-atlasapi/pull/248


**Full Changelog**: https://github.com/brainglobe/brainglobe-atlasapi/compare/v2.0.0...v2.0.1

Rename and merge with `bg-atlasgen`

This package will be merging with `bg-atlasgen`, and then renaming to `brainglobe-atlasapi` for consistency with other BrainGlobe tools.
See https://github.com/brainglobe/BrainGlobe/issues/43 for details.

What's Changed
* Add CITATION.cff by willGraham01 in https://github.com/brainglobe/bg-atlasapi/pull/192
* Update test_and_deploy.yml by alessandrofelder in https://github.com/brainglobe/bg-atlasapi/pull/194
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/195
* Add check manifest to CI by willGraham01 in https://github.com/brainglobe/bg-atlasapi/pull/196
* Add PyArrow as dependency by willGraham01 in https://github.com/brainglobe/bg-atlasapi/pull/197
* Prepare for merge and rename by willGraham01 in https://github.com/brainglobe/bg-atlasapi/pull/198

New Contributors
* alessandrofelder made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/194

**Full Changelog**: https://github.com/brainglobe/bg-atlasapi/compare/v1.0.3...v1.0.4

Bump to brainglobe-space dependency

What's Changed
* update travis by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/79
* Update testing by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/80
* Update readme by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/84
* Updating pbar and a couple other things by FedeClaudi in https://github.com/brainglobe/bg-atlasapi/pull/87
* Remove auto-print upon BrainGlobeAtlas construction by nickdelgrosso in https://github.com/brainglobe/bg-atlasapi/pull/89
* Atlas metadata print out by FedeClaudi in https://github.com/brainglobe/bg-atlasapi/pull/91
* Add osten mouse atlas to readme by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/93
* Move to GitHub actions by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/95
* Create code of conduct by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/97
* List all available atlases and their versions in machine-readable format (2) by nickdelgrosso in https://github.com/brainglobe/bg-atlasapi/pull/101
* Fix linting problems, and test on PR by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/102
* Fix NumPy future warning on get structure mask by seankmartin in https://github.com/brainglobe/bg-atlasapi/pull/106
* moved print to BrainGlobeAtlas by vigji in https://github.com/brainglobe/bg-atlasapi/pull/108
* Changes to config file location by chrisroat in https://github.com/brainglobe/bg-atlasapi/pull/111
* Optimize `get_structure_mask` for structures with many children by sdiebolt in https://github.com/brainglobe/bg-atlasapi/pull/120
* Lint setup fix by vigji in https://github.com/brainglobe/bg-atlasapi/pull/122
* Fix the `-` in requirements by paddyroddy in https://github.com/brainglobe/bg-atlasapi/pull/124
* Allow `-h` and `--help` for help by paddyroddy in https://github.com/brainglobe/bg-atlasapi/pull/125
* Add an optional attribute to handle updates during atlas downloads by yoda-vid in https://github.com/brainglobe/bg-atlasapi/pull/126
* Align with other BG packages by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/127
* Tutorial notebook improvements by raacampbell in https://github.com/brainglobe/bg-atlasapi/pull/128
* Add new atlas by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/133
* Update supported Python versions by dstansby in https://github.com/brainglobe/bg-atlasapi/pull/135
* Replace brainglobe with NI actions by dstansby in https://github.com/brainglobe/bg-atlasapi/pull/137
* Use standard pre-commit config by dstansby in https://github.com/brainglobe/bg-atlasapi/pull/138
* Switch to pyproject.toml by dstansby in https://github.com/brainglobe/bg-atlasapi/pull/139
* Error on warnings raised in tests by dstansby in https://github.com/brainglobe/bg-atlasapi/pull/140
* Turn off codecov comments by dstansby in https://github.com/brainglobe/bg-atlasapi/pull/145
* Build wheel when building package by dstansby in https://github.com/brainglobe/bg-atlasapi/pull/144
* Typo fixes by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/151
* Update links by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/152
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/153
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/154
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/155
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/156
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/158
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/159
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/160
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/162
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/164
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/165
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/166
* Set pre-commit autoupdate frequency to monthly by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/167
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/168
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/171
* Fix download progress bar by IgorTatarnikov in https://github.com/brainglobe/bg-atlasapi/pull/178
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/181
* Remove banner image by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/185
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/186
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/188
* Add citation info by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/189
* Various housekeeping by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/190
* Bump to brainglobe space by willGraham01 in https://github.com/brainglobe/bg-atlasapi/pull/191

New Contributors
* nickdelgrosso made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/89
* seankmartin made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/106
* chrisroat made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/111
* sdiebolt made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/120
* yoda-vid made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/126
* raacampbell made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/128
* dstansby made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/135
* pre-commit-ci made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/153
* IgorTatarnikov made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/178
* willGraham01 made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/191

**Full Changelog**: https://github.com/brainglobe/bg-atlasapi/compare/v1.0.0...v1.0.3