Brainglobe-utils

Latest version: v0.6.3

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0.6.3

What's Changed
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/brainglobe-utils/pull/100
* Change cache path by IgorTatarnikov in https://github.com/brainglobe/brainglobe-utils/pull/101
* Schedule tests to run weekly by IgorTatarnikov in https://github.com/brainglobe/brainglobe-utils/pull/102
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/brainglobe-utils/pull/103
* use log10 for zero padding tiffs by alessandrofelder in https://github.com/brainglobe/brainglobe-utils/pull/104
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/brainglobe-utils/pull/105
* Notify slack on scheduled test failure by IgorTatarnikov in https://github.com/brainglobe/brainglobe-utils/pull/106
* Accept both .tif and .tiff files in directories by IgorTatarnikov in https://github.com/brainglobe/brainglobe-utils/pull/108


**Full Changelog**: https://github.com/brainglobe/brainglobe-utils/compare/v0.6.2...v0.6.3

0.6.2

What's Changed
* Conform to new linting rules by IgorTatarnikov in https://github.com/brainglobe/brainglobe-utils/pull/97
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/brainglobe-utils/pull/96
* improve read_with_dask docs, ignore OME metadata by alessandrofelder in https://github.com/brainglobe/brainglobe-utils/pull/98


**Full Changelog**: https://github.com/brainglobe/brainglobe-utils/compare/v0.6.1...v0.6.2

0.6.1

What's Changed
* handle nii.gz correctly by alessandrofelder in https://github.com/brainglobe/brainglobe-utils/pull/93
* Export cells to brainrender from brainmapper widget by adamltyson in https://github.com/brainglobe/brainglobe-utils/pull/95


**Full Changelog**: https://github.com/brainglobe/brainglobe-utils/compare/v0.6.0...v0.6.1

0.6.0

Adds a new `brainmapper` napari widget to transform points to atlas space

What's Changed
* Changed collapsed icon for CollapsibleWidget by IgorTatarnikov in https://github.com/brainglobe/brainglobe-utils/pull/78
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/brainglobe-utils/pull/80
* Remove nrrd IO by adamltyson in https://github.com/brainglobe/brainglobe-utils/pull/82
* Update supported python versions by adamltyson in https://github.com/brainglobe/brainglobe-utils/pull/81
* Add cell matching support by matham in https://github.com/brainglobe/brainglobe-utils/pull/74
* Provide optional dependencies for qt instead of napari by niksirbi in https://github.com/brainglobe/brainglobe-utils/pull/84
* Numpy 2.0 compliance by IgorTatarnikov in https://github.com/brainglobe/brainglobe-utils/pull/85
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/brainglobe-utils/pull/86
* Standardise contact information in readme by adamltyson in https://github.com/brainglobe/brainglobe-utils/pull/87
* Add transform widget by adamltyson in https://github.com/brainglobe/brainglobe-utils/pull/88


**Full Changelog**: https://github.com/brainglobe/brainglobe-utils/compare/v0.5.0...v0.6.0

0.5.0

What's Changed
* Run CI on both types of Mac by alessandrofelder in https://github.com/brainglobe/brainglobe-utils/pull/71
* Support single z-stack tif file for input by matham in https://github.com/brainglobe/brainglobe-utils/pull/67
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/brainglobe-utils/pull/72
* Add image IO loading code from cellfinder & create image IO submodule within IO by adamltyson in https://github.com/brainglobe/brainglobe-utils/pull/73
* Be permissive about tiff axis metadata by alessandrofelder in https://github.com/brainglobe/brainglobe-utils/pull/75

New Contributors
* matham made their first contribution in https://github.com/brainglobe/brainglobe-utils/pull/67

**Full Changelog**: https://github.com/brainglobe/brainglobe-utils/compare/v0.4.3...v0.5.0

0.4.3

What's Changed
* Add tests for cells sub-module by K-Meech in https://github.com/brainglobe/brainglobe-utils/pull/61
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/brainglobe-utils/pull/62
* Add tests for qtpy sub-module by K-Meech in https://github.com/brainglobe/brainglobe-utils/pull/64
* Convert remaining docstrings to numpydoc style by K-Meech in https://github.com/brainglobe/brainglobe-utils/pull/66
* Add docstrings and expand tests for IO sub-module by K-Meech in https://github.com/brainglobe/brainglobe-utils/pull/65
* Update Pathlib usage and docstrings by willGraham01 in https://github.com/brainglobe/brainglobe-utils/pull/68
* Expand header_widget to include doc path, citation and help text by K-Meech in https://github.com/brainglobe/brainglobe-utils/pull/70


**Full Changelog**: https://github.com/brainglobe/brainglobe-utils/compare/v0.4.2...v0.4.3

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