Capcruncher

Fix to package generation


**Full Changelog**: https://github.com/sims-lab/CapCruncher/compare/v0.3.13...v0.3.14

What's Changed
* fix(pipeline): fastqc rule uses the wrapper script by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/273
* Ensure no special chars in viewpoints by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/275
* fix(docs): update icen documentation by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/276
* Docs update plotting documentation by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/278
* chore: Remove duplicate entries in bedgraph files by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/289
* feat(interactions-compare-summarise): improve speed and reduce complexity of code by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/290
* Fix(polars) update drop method for compatibility by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/300
* build(deps): Update pydantic requirement from <2.6.0,>2.4.0 to >2.4.0,<2.11.0 by dependabot in https://github.com/sims-lab/CapCruncher/pull/301
* build(deps): Update polars requirement from <=0.19.15 to <=1.6.0 by dependabot in https://github.com/sims-lab/CapCruncher/pull/297
* build(deps): Update pybedtools requirement from <=0.9.0 to <=0.9.1 by dependabot in https://github.com/sims-lab/CapCruncher/pull/256
* fix(genome_digest): update write_csv to use include_header by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/306
* build(deps): Update pyranges requirement from <=0.0.129 to <=0.1.2 by dependabot in https://github.com/sims-lab/CapCruncher/pull/304
* build(deps): Update trackhub requirement from <=0.2.4 to <=1.0 by dependabot in https://github.com/sims-lab/CapCruncher/pull/302
* build(deps): Update cooler requirement from <=0.9.2 to <=0.10.3 by dependabot in https://github.com/sims-lab/CapCruncher/pull/303
* build(deps): Update ujson requirement from <=5.7.0 to <=5.8.0 by dependabot in https://github.com/sims-lab/CapCruncher/pull/245


**Full Changelog**: https://github.com/sims-lab/CapCruncher/compare/v0.3.12...v0.3.13

What's Changed
* fix(packaging): Corrected some install errors
* chore(CI): update CI pipeline by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/269
* feat(pipeline): Improve error reporting by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/270


**Full Changelog**: https://github.com/sims-lab/CapCruncher/compare/v0.3.11...v0.3.12

What's Changed
* chore(packaging): split requirements by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/259
* fix(deps): PuLP<2.8.0 by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/264
* fix: install "full" capcruncher package by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/263
* chore(deps): Bumped minimum capcruncher-tools version by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/262


**Full Changelog**: https://github.com/sims-lab/CapCruncher/compare/v0.3.10...v0.3.11

What's Changed
* Update requirements.txt with latest package by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/252


**Full Changelog**: https://github.com/sims-lab/CapCruncher/compare/v0.3.9...v0.3.10

What's Changed
* build(deps): Update plotly requirement from <=5.17.0,>5.0.0 to >5.0.0,<=5.18.0 by dependabot in https://github.com/sims-lab/CapCruncher/pull/218
* chore: pyarrow minimum to 14.0.1 by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/231
* fix(deduplicate-slices): Wrong Snakemake parameters supplied to script when empty input by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/232
* Fixes UCSC hub generated when create == no by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/230
* CCTrack file_type now accepts all cb tracks by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/229
* fix(report): Use the active kernel for report generation by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/233
* feat(utils): added make_chicago_map cli command by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/228
* Reduce annotation memory usage by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/236
* Feat enable aggregated track plotting by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/235
* chore(deps): pinned polars by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/240
* feat(pileup): added to_pyranges by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/227
* fix(pipeline): using fastqc snakemake wrapper by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/239
* fix(pipeline): Use recursion to format config dictionary by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/242
* fix(ucsc-hub): Correct errors when generating the "Replicates" composite track by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/243
* feat(pipeline): plotting logs moved by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/238
* fix(cis-and-trans-stats): fixes OOM error by alsmith151 in https://github.com/sims-lab/CapCruncher/pull/250
* build(deps): Update pydantic requirement from <2.5.0,>2.4.0 to >2.4.0,<2.6.0 by dependabot in https://github.com/sims-lab/CapCruncher/pull/248
* build(deps): Update pyranges requirement from <=0.0.127 to <=0.0.129 by dependabot in https://github.com/sims-lab/CapCruncher/pull/247


**Full Changelog**: https://github.com/sims-lab/CapCruncher/compare/V0.3.8...v0.3.9