Capcruncher

This release includes a number of bugfixes related to processing Tiled-C data, normalization and cis/trans statistics. In addition, this release brings new functionality to the package and the pipeline. CapCruncher pipeline and the capcruncher CLI now has the ability to generate genome browser like tracks for BigWigs (Capture-C/Tri-C) and reporter interaction matrices (Tri-C/Tiled-C). Future updates to the documentation will provide examples of this functionality. CapCruncher pipeline is now able to use an experimental design matrix to increase the flexibility of input FASTQ naming.

Alpha release of the CapCruncher package. The package has now been uploaded to pypi and can now be installed using pip into a prepared conda environment. The package is now also on the bioconda channel and can now be installed via conda.

Alpha release of the CapCruncher package. The package has now been uploaded to pypi and can now be installed using pip into a prepared conda environment. This is effectively the same version currently on conda with the exception of the diffxpy dependency that is now optional.