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Not secure

Changed
- Use pydantic models for handling lims samples

Not secure

Fixed
- Fix bug that that prevented wgs fastq samples from being genotyped

Not secure

Fixed
- Move synopsis and cohorts from sample to case in the database since that is how they are used

Not secure

Fixed
- Fixed bug in upload delivery report automation

Not secure

Fixed
- Fixed context in upload vogue

Not secure

Fixed
- Added missing pipeline option in database for SARS-CoV-2 on case in database

Has known vulnerabilities

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