Added
- email functionality
Changed
- gisaid upload command: gisaid cli log file will be saved in housekeeper with tag gisaid-log
- gisaid upload command: the log file will be appended to if the upload is run again for the same case.
- gisaid upload command: Accession numbers will be parsed from the log file
- gisaid upload command: The completion file which already exists in housekeeper will be updated with accession numbers
- gisaid upload command: If files are missing or not all samples within the case were uploaded to gisiad, an email will be sent to logwatch.