Checkqc

Latest version: v4.0.3

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1.7.2

This release fixes a minor bug where the error rate handler error message was odd.

1.7.1

The version was not properly updated in the last release (so version 1.7.0 will not be available via pypi). However v1.7.1 should fix this and contain the same updates as the previous release.

1.7.0

CheckQC now supports Novaseq S1, S2, and S4 flowcells. Enjoy!

1.6.2

This version updates nothing user facing, but facilitates the release process of checkQC by automatically using new releases to PyPI.

Tags v1.6.0 and v1.6.1 were attempts to get this working and can be disregarded.

1.5.0

The ProcessPoolExecutor functionality has been removed from the web service, basically reducing it to running things in a blocking fashion. The problem with the ProcessPoolExecutor was that it spawned a lot of threads that were left running and wouldn't terminate properly. The most straightforward way to fix it is, for now, to remove the threading.

A Dockerfile has been added for running the web service in a container.

v.1.4.1
This is a bug fix release which makes sure that the undetermined percentage handler does not break when the yield is zero. Thanks to sarek928 for reporting it: https://github.com/Molmed/checkQC/issues/55

1.4.0

Minor update:
- Read length is now defined as the number of cycles run for a read. Read length intervals in config have been updated as an effect of this.
- Read length intervals are now lower and upper inclusive. This together with the new read length defintion solved issue 53 .
- Config usage have been moved from config to docs.
- The issue where a certain machine type, run type and read length combination can't be found in the config, will now be communicated to the user.

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