Covalent

Authors

- Venkat Bala <venkatagnostiq.ai>

Tests

- Update dask cli test to match Covalent Dask cluster configuration

Changed

- Remove newline from log stream formatter for better log statment output
- Jsonify covalent cluster cli outputs

Authors

- Casey Jao <caseyagnostiq.ai>

Changed

- Make `BaseExecutor` and `BaseAsyncExecutor` class siblings, not parent and child.

Operations

- Only validate webapp if the webapp was built

Tests

- Fixed randomly failing lattice json serialization test

Authors

- Sankalp Sanand <sankalpagnostiq.ai>
- Faiyaz Hasan <faiyazagnostiq.ai>
- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]users.noreply.github.com>
- Co-authored-by: Venkat Bala <venkatagnostiq.ai>
- Co-authored-by: Will Cunningham <wjcunningham7gmail.com>

Changed

- Use `update_config` to modify dask configuration from the cluster process
- Simplify `set_config` logic for dask configuration options on `covalent start`
- Removed default values from click options for dask configuration related values

Added

- Configured default dask configuration options in `defaults.py`

Fixed

- Overwriting config address issue.

Tests

- Moved misplaced functional/integration tests from the unit tests folder to their respective folders.
- All of the unit tests now use test DB instead of hitting a live DB.
- Updated `tests.yml` so that functional tests are run whenever tests get changed or github actions are changed.
- Several broken tests were also fixed.

Authors

- Alejandro Esquivel <aealejandro.ltd>
- Co-authored-by: Casey Jao <caseyagnostiq.ai>
- Will Cunningham <wjcunningham7users.noreply.github.com>
- Co-authored-by: Scott Wyman Neagle <scottagnostiq.ai>

Added

- Added `rsync` dependency in `Dockerfile`

Removed

- `Makefile` which was previously improperly committed

Operations

- Functional tests are run only on `develop`
- `tests.yml` can be run manually provided a commit SHA
- `tests.yml` uses a `build` filter to conditionally install and build Covalent if build files are modified
- `docker.yml` is now only for dev work, and is manually triggered given an SHA
- `release.yml` is enhanced to push stable and pre-release images to a public ECR repo

Authors

- Alejandro Esquivel <aealejandro.ltd>
- Co-authored-by: Casey Jao <caseyagnostiq.ai>

Changed

- Updated Base executor to support non-unique `retval_key`s, particularly for use in File Transfer where we may have several CallDeps with the reserved `retval_key` of value `files`.

Authors

- Alejandro Esquivel <aealejandro.ltd>
- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]users.noreply.github.com>

Fixed

- Updated `covalent db migrations` to overwrite `alembic.ini` `script_location` with absolute path to migrations folder
- Updated `covalent db alembic [args]` command to use project root as `cwd` for alembic subprocess