* Optimize performance of precomputation of co-occurrence matrix by doing a single commit per sample
0.7.1
Changes
* Fix CLI for cooccurrence matrix...
0.7.0
Changes
* Maker a separate CLI operation for the computation of the cooccurrence matrix `--covigator-cooccurrence-matrix`. Optimizes the previous implementation. Adds support for GISAID. Adds a filter of mutations by length in order to optionally remove very long indels.
0.6.6
Changes
* Add DB patch for mismatching domains between pipeline and database * Ensure order of callbacks in recurrent mutations tab + some other corner cases * Avoid lineages from pangolin with the string "None"
0.6.4
Changes
* Added an option to skip VCF loading in DB. This is useful to reload sample metadata into the database without needing to reload all VCFs. To use this mode use the environment variable COVIGATOR_SKIP_VCF_LOADING=true
0.6.2
Changes
- Fix issue with repeated months in a dropdown - Remove LRU caches that were causing trouble more than helping - Fix import script