Cptac

The release candidate for cptac v.1.5

This release significantly changes the structure of the cptac package. In order to better handle the increasing quantity and complexity of data available, the package has been broken up into cancer classes that each have several different sources for their data. This means that the methods for accessing data have changed slightly. There shouldn't be any changes to the data itself, but more testing is required to ensure that this is the case. This release candidate will be used to find and fix any problems with the new structure to make this transition as smooth as possible.

The tutorials and use cases will be updated soon to reflect the changes for this release.

Publicize pdac data and address pandas warnings

Added a parameter to the cptac.pancan.download function so that users can manually enter a temporary Box access token if working on a remote machine without web browser access for Box sign in. The user generates the token on a local machine with a web browser, and then pastes it in. Instructions for this can be found in the pancan tutorial: https://github.com/PayneLab/cptac/blob/master/notebooks/tutorial07_pancan.ipynb

Bugfix for PDC download function.

Updated dependencies for pandas