Cptac

This release reflects that the BRCA data is now publicly accessible, and a password is no longer required to download the files.

This release fixes a bug in the WikiPathways data parser that had previously caused the various `cptac.utils` functions that access WikiPathways data to return incomplete results.

It also includes an update to the LSCC data to now use the log-ratio CNV file.

This release includes additional bug fixes, and provides the option of using Welch's t test instead of Student's t test in the cptac.utils.wrap_ttest function, by passing `False` to the `equal_var` parameter.

This patch release fixes a bug in the join_omics_to_mutations function that arose due to a change in the way pandas works. The bug caused an exception to be thrown when the function was executed with the mutations_filter parameter set to `None`. It is now fixed.

This patch release handles password restrictions applied to the BRCA and GBM datasets from an external source. Additionally, the following changes and enhancements were added:

- Added Dataset.multi_join fuction
- Added tissue_type parameter for metadata getters
- Added clinical column to show that all GBM tumors are stage IV (by definition)
- Renamed/combined utils functions:
- Combined:
get_protein_pathways => get_pathways_with_proteins, database="wikipathways"
search_reactome_pathways_with_proteins => get_pathways_with_proteins, database="reactome"
search_reactome_proteins_in_pathways => get_proteins_in_pathways, database="reactome"
get_proteins_in_pathway => get_proteins_in_pathways, database="wikipathways"

- Renamed:
list_pathways => list_pathways_wikipathways

Updated LSCC data, including circular_RNA and ubiquitinomics.

We also moved the `DataSet.reduce_multiindex` and `DataSet.search` functions to be part of the `cptac.utils` sub-module, instead of members of the `DataSet` class. You can now access those functions as `cptac.utils.reduce_multiindex` and `cptac.utils.search`, respectively. We also added an optional `quiet` parameter to `reduce_multiindex`.

We also renamed the abstract `DataSet` class to `Dataset`.