Custardpy

Latest version: v0.7.3

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- Added `-o` option to `custardpy_process_hic`, `custardpy_cooler_subfunc.sh`, `makeMatrix_intra.sh`, `call_HiCCUPS.sh` and `juicer_callTAD.sh`

- Added Juicerstats.sh to summarize the mapping stats of Juicer
- Added Coolerstats.sh to summarize the mapping stats of Cooler

- Added LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/cuda/compat/:/usr/local/cuda/lib64

- Bug fix in installaion of 3DChromatin_ReplicateQC and HiCrep
- Bug fix in QuASAR (https://github.com/kundajelab/3DChromatin_ReplicateQC/issues/13)

- Bug fix for HOMER installation in Dockerfile
- Changed the parameter of BWA MEM from `-SP` to `-5SP`

- Changed the name of output directory for `custardpy_juicer`, `custardpy_cooler_HiC`, and `custardpy_cooler_MicroC`

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