Cylindra

Latest version: v1.0.0b5

Safety actively analyzes 714973 Python packages for vulnerabilities to keep your Python projects secure.

Scan your dependencies

Page 5 of 5

0.7.0

- Algorithms of fitting, monomer mapping seem almost stable.
- `Molecules` works without any fatal bugs.
- Good compatibility with [PEET](https://bio3d.colorado.edu/).

0.6.4

Bug Fixes
----------
- Coordinate transformation was not correct! Now both Cartesian, cylindric coordinate transformation returns correct images.
- Tomogram list double-click callback used to load wrong results.

New Features
---------------
- Macro can be executed in console (don't start worker when function is called outside the GUI).
- New spline refinement algorithm `fit_mao`.

Changes
---------
- Faster (~2x) iterative phase cross correlation using `ft_pcc_maximum` in `impy==1.24.2`.
- Faster (~2x) phase cross correlation with mirrored image by calculating FT image mathematically.
- Simpler API in some functions.
- Renamed.
- `paths` → `splines`
- `n_paths` → `n_splines`
- `ft_params` → `local_ft_params`

0.6.3

Basic algorithms seem stable and perform very well.

- `fit` → OK
- `refine` → OK
- `measure_radius` → OK
- `ft_params` → OK
- `global_ft_params` → sometimes fails due to bug in straightening.

GUI needs more improvement, but this might be done in the `magic-class` side.

0.3.2

Last update with current algorithm design.
There would be a big change after this version but basically its performance should not change.

0.2.1

Basic functions are working well.
Many of them are dependent on `impy`.

Page 5 of 5

© 2025 Safety CLI Cybersecurity Inc. All Rights Reserved.