Dask-image

----------------------

We're pleased to announce the release of dask-image 2024.5.0!

Highlights

Highlights of this release include:

* Martin Schorb adding 'rotate', 'spline_filter' and 'spline_filter1d' functions (213)
* Erik Holmgren adding functionality to allow wrapping labels over array boundaries (344), and
* Christoph Sommer's work allowing aicsimageio and other da.core.Array sub-classes as input arrays (361)

New Features

* Add the rotate, spline_filter, and spline_filter1d functions to ndimage (213)
* Wrapping labels over array boundaries (344)
* Add python 3.12 support (370)

Improvements

* Relaxed type check of input array, to allow da.core.Array sub-classes… (361)
* Update slice index comment to reflect code change (353)

Maintenance

* Switch to pyproject.toml package setup, replace versioneer with setuptools-scm (306)
* Fix cupy pytest errors (368)
* Switch to newer GPU CI images (345)
* Bump GPU CI to CUDA 11.8 (348)
* Maintenance: fix CI test errors (366)
* Update CI test environments (367)
* Additions to release guide and change to release note generation script (339)
* Fix typo in pull request template (347)
* Workaround for the sphinx version problem in the readthedocs build environment (354)
* Pin dask to 2024.4.1 to avoid error during dask.dataframe import with python 3.11.9 (363)
* Get rid of distutils dependency -- Depend on newer scipy (346)
* Bump actions/checkout from 3 to 4 (342)
* Bump actions/setup-python from 4 to 5 (350)
* Bump coverallsapp/github-action from 2.2.1 to 2.2.3 (343)
* Bump conda-incubator/setup-miniconda from 2 to 3 (349)
* Bump coverallsapp/github-action from 2.2.3 to 2.3.0 (365)
* Update versioneer to version 0.29 for compatibility with python 3.12 (357)


9 authors added to this release (alphabetical)

* `Charles Blackmon-Luca <https://github.com/dask/dask-image/commits?author=charlesbluca>`_ - charlesbluca
* `Christoph Sommer <https://github.com/dask/dask-image/commits?author=sommerc>`_ - sommerc
* `dependabot[bot] <https://github.com/dask/dask-image/commits?author=dependabot[bot]>`_ - dependabot[bot]
* `Erik Holmgren <https://github.com/dask/dask-image/commits?author=Holmgren825>`_ - Holmgren825
* `Genevieve Buckley <https://github.com/dask/dask-image/commits?author=GenevieveBuckley>`_ - GenevieveBuckley
* `jakirkham <https://github.com/dask/dask-image/commits?author=jakirkham>`_ - jakirkham
* `Mark Harfouche <https://github.com/dask/dask-image/commits?author=hmaarrfk>`_ - hmaarrfk
* `Martin Schorb <https://github.com/dask/dask-image/commits?author=martinschorb>`_ - martinschorb
* `Marvin Albert <https://github.com/dask/dask-image/commits?author=m-albert>`_ - m-albert


5 reviewers added to this release (alphabetical)

* `Erik Holmgren <https://github.com/dask/dask-image/commits?author=Holmgren825>`_ - Holmgren825
* `Genevieve Buckley <https://github.com/dask/dask-image/commits?author=GenevieveBuckley>`_ - GenevieveBuckley
* `jakirkham <https://github.com/dask/dask-image/commits?author=jakirkham>`_ - jakirkham
* `Juan Nunez-Iglesias <https://github.com/dask/dask-image/commits?author=jni>`_ - jni
* `Marvin Albert <https://github.com/dask/dask-image/commits?author=m-albert>`_ - m-albert

----------------------

We're pleased to announce the release of dask-image 2023.08.1!

This is a patch release to complete the dropping of python 3.8
in the previous release.

* Use `>=3.9` in `python_requires` in `setup.py` (336)

2 authors added to this release (alphabetical)

* `jakirkham <https://github.com/dask/dask-image/commits?author=jakirkham>`_ - jakirkham
* `Marvin Albert <https://github.com/dask/dask-image/commits?author=m-albert>`_ - m-albert


0 reviewers added to this release (alphabetical)

----------------------

We're pleased to announce the release of dask-image 2023.08.0!

Highlights

This version fixes bugs related to processing CuPy backed dask arrays
and improves testing on GPU CI. It drops support for python 3.8 and
adds pandas as a dependency. As a feature improvement, the dask-image
equivalent of ``scipy.ndimage.label`` now supports arbitrary
structuring elements.

For full support of all GPU functionality in dask-image we recommend
using CuPy version 9.0.0 or higher.

Improvements

* Generalised ndmeasure.label to arbitrary structuring elements (321)

Bug Fixes

* Added missing cupy test mark and fixed cupy threshold (329)
* Moved functions from ndimage submodules to ndimage namespace (325)

Updated requirements

* Drop Python 3.8, in accordance with NEP29 recommendation (315)
* Require NumPy 1.18+ (304)
* Add pandas requirement for find_objs function (309)

Build Tools

* Continuous integration
* Update GPU conda environment before running tests (318)
* Fix GitHub actions README badge (323)
* Dependabot updates
* Bump coverallsapp/github-action from 2.0.0 to 2.1.2 (313)
* Bump coverallsapp/github-action from 2.1.2 to 2.2.0 (322)
* Bump coverallsapp/github-action from 2.2.0 to 2.2.1 (326)


6 authors added to this release (alphabetical)

* `Charles Blackmon-Luca <https://github.com/dask/dask-image/commits?author=charlesbluca>`_ - charlesbluca
* `David Stansby <https://github.com/dask/dask-image/commits?author=dstansby>`_ - dstansby
* `dependabot[bot] <https://github.com/dask/dask-image/commits?author=dependabot[bot]>`_ - dependabot[bot]
* `Genevieve Buckley <https://github.com/dask/dask-image/commits?author=GenevieveBuckley>`_ - GenevieveBuckley
* `jakirkham <https://github.com/dask/dask-image/commits?author=jakirkham>`_ - jakirkham
* `Marvin Albert <https://github.com/dask/dask-image/commits?author=m-albert>`_ - m-albert


4 reviewers added to this release (alphabetical)

* `Charles Blackmon-Luca <https://github.com/dask/dask-image/commits?author=charlesbluca>`_ - charlesbluca
* `Genevieve Buckley <https://github.com/dask/dask-image/commits?author=GenevieveBuckley>`_ - GenevieveBuckley
* `jakirkham <https://github.com/dask/dask-image/commits?author=jakirkham>`_ - jakirkham
* `Juan Nunez-Iglesias <https://github.com/dask/dask-image/commits?author=jni>`_ - jni

-----------------------

We're pleased to announce the release of dask-image v2023.03.0!

Highlights

This version of dask-image drops support for python 3.7,
now requires a minimum Dask version of 2021.10.0 or higher
(due to a security patch), and makes tifffile a regular requirement.
We also now build and publish wheel files to PyPI.

Improvements

* Documentation
* Add GPU CI info to contributing docs (300)
* Docs: add GPU support info to coverage table (301)

* Testing
* Test `gaussian` alias (287)
* Update NaN block size tests for threshold_local function (289)
* Test `find_objects` w/incorrect array type (292)

Deprecations and updated requirements

* Update supported python versions to 3.8, 3.9, 3.10, & 3.11 (drop python 3.7) (284)
* Security update: Dask v2021.10.0 as minimum allowable version (288)
* Make tifffile regular requirement (295)

Build Tools

* Continuous integration
* Refresh doc environment (273)
* Setup Coveralls with GitHub Actions (274)
* Pin to jinja2<3.1 to avoid Readthedocs build error (278)
* Updates `setup.py`'s Python versions (285)
* Combine CI workflows for testing and release upload to PyPI (291)
* Enable option to restart GHA (293)
* Readd `environment-latest.yml` symlink (294)
* Add python 3.10 to gpuCI matrix (298)
* Releases
* ENH: Build and publish wheels in GitHub CI (272)
* Update release notes script (299)
* Release notes for v2022.09.0 (270)
* Dependabot updates
* Create dependabot.yml (279)
* Bump actions/setup-python from 2 to 4 (280)
* Bump actions/checkout from 2 to 3 (281)
* Bump coverallsapp/github-action from 1.1.3 to 1.2.2 (282)
* Bump coverallsapp/github-action from 1.2.2 to 1.2.4 (283)
* Bump coverallsapp/github-action from 1.2.4 to 2.0.0 (296)

Other Pull Requests

* Group all imread functions together in the same file (290)

7 authors added to this release (alphabetical)

* `Charles Blackmon-Luca <https://github.com/dask/dask-image/commits?author=charlesbluca>`_ - charlesbluca
* `dependabot[bot] <https://github.com/dask/dask-image/commits?author=dependabot[bot]>`_ - dependabot[bot]
* `Genevieve Buckley <https://github.com/dask/dask-image/commits?author=GenevieveBuckley>`_ - GenevieveBuckley
* `jakirkham <https://github.com/dask/dask-image/commits?author=jakirkham>`_ - jakirkham
* `Marvin Albert <https://github.com/dask/dask-image/commits?author=m-albert>`_ - m-albert
* `Matt McCormick <https://github.com/dask/dask-image/commits?author=thewtex>`_ - thewtex
* `Volker Hilsenstein <https://github.com/dask/dask-image/commits?author=VolkerH>`_ - VolkerH


3 reviewers added to this release (alphabetical)

* `Genevieve Buckley <https://github.com/dask/dask-image/commits?author=GenevieveBuckley>`_ - GenevieveBuckley
* `jakirkham <https://github.com/dask/dask-image/commits?author=jakirkham>`_ - jakirkham
* `Matt McCormick <https://github.com/dask/dask-image/commits?author=thewtex>`_ - thewtex

-----------------------

We're pleased to announce the release of dask-image v2022.09.0!

Not much has changed since the last release.
Volker Hilsenstein has improved imread, which now uses natural sorting for strings.
Fred Blunt has fixed deprecation warnings from scipy.ndimage,
and we've also done some miscellaneous maintenance work.

Improvements

* Use natural sorting in `imread(...)` when globbing multiple files (265)
* Avoid DeprecationWarnings when importing scipy.ndimage filter functions (261)


Maintenance

* Remove/add testing for python 3.6/3.9, update CI pinnings (257)
* Update docs theme for rebranding (263)
* Run CI on `main` (264)


6 authors added to this release (alphabetical)

* `Charles Blackmon-Luca <https://github.com/dask/dask-image/commits?author=charlesbluca>`_ - charlesbluca
* `Fred Bunt <https://github.com/dask/dask-image/commits?author=fbunt>`_ - fbunt
* `Genevieve Buckley <https://github.com/dask/dask-image/commits?author=GenevieveBuckley>`_ - GenevieveBuckley
* `jakirkham <https://github.com/dask/dask-image/commits?author=jakirkham>`_ - jakirkham
* `Sarah Charlotte Johnson <https://github.com/dask/dask-image/commits?author=scharlottej13>`_ - scharlottej13
* `Volker Hilsenstein <https://github.com/dask/dask-image/commits?author=VolkerH>`_ - VolkerH


3 reviewers added to this release (alphabetical)

* `Charles Blackmon-Luca <https://github.com/dask/dask-image/commits?author=charlesbluca>`_ - charlesbluca
* `Genevieve Buckley <https://github.com/dask/dask-image/commits?author=GenevieveBuckley>`_ - GenevieveBuckley
* `jakirkham <https://github.com/dask/dask-image/commits?author=jakirkham>`_ - jakirkham

----------

We're pleased to announce the release of dask-image 2021.12.0!

Highlights

The major highlights of this release include the introduction of new featurees for ``find_objects`` and spline filters.
We have also moved to using CalVer (calendar version numbers) to match the main Dask project.

New Features

* Find objects bounding boxes (240)
* Add spline_filter and spline_filter1d (215)


Improvements

* ENH: add remaining kwargs to binary_closing and binary_opening (221)
* ndfourier: support n > 0 (for rfft) and improve performance (222)
* affine_transform: increased shape of required input array slices (216)


Bug Fixes

* BUG: add missing import of warnings in dask_image.ndmeasure (224)
* Fix wrap bug in ndfilters convolve and correlate (243)
* Upgrade for compatibility with latest dask release (241)


Test infrastructure

* GitHub actions testing (188)
* Set up gpuCI testing on PRs (248)
* Remove `RAPIDS_VER` axis, bump `CUDA_VER` in gpuCI matrix (249)


Documentation updates

* Code style cleanup (227)
* Remove out of date email address, strip __author__ & __email__ (225)
* Update release guide, Dask CalVer uses YYYY.MM.DD (236)
* Update min python version in setup.py (250)
* Use new Dask docs theme (245)
* Docs: Add `find_objects` to the coverage table (254)


Other Pull Requests

* Switch to CalVer (calendar versioning) (233)


6 authors added to this release (alphabetical)

* `anlavandier <https://github.com/dask/dask-image/commits?author=anlavandier>`_ - anlavandier
* `Charles Blackmon-Luca <https://github.com/dask/dask-image/commits?author=charlesbluca>`_ - charlesbluca
* `Genevieve Buckley <https://github.com/dask/dask-image/commits?author=GenevieveBuckley>`_ - GenevieveBuckley
* `Gregory R. Lee <https://github.com/dask/dask-image/commits?author=grlee77>`_ - grlee77
* `Jacob Tomlinson <https://github.com/dask/dask-image/commits?author=jacobtomlinson>`_ - jacobtomlinson
* `Marvin Albert <https://github.com/dask/dask-image/commits?author=m-albert>`_ - m-albert


6 reviewers added to this release (alphabetical)

* `anlavandier <https://github.com/dask/dask-image/commits?author=anlavandier>`_ - anlavandier
* `Genevieve Buckley <https://github.com/dask/dask-image/commits?author=GenevieveBuckley>`_ - GenevieveBuckley
* `Gregory R. Lee <https://github.com/dask/dask-image/commits?author=grlee77>`_ - grlee77
* `Jacob Tomlinson <https://github.com/dask/dask-image/commits?author=jacobtomlinson>`_ - jacobtomlinson
* `jakirkham <https://github.com/dask/dask-image/commits?author=jakirkham>`_ - jakirkham
* `Marvin Albert <https://github.com/dask/dask-image/commits?author=m-albert>`_ - m-albert