Deeptools

* drop support for python 3.7
* doc fixes (argparse properly displayed, minor changes in installation instructions)
* deepblue support stops
* initiate deprecation of tight_layout in plotheatmap, in favor of constrained_layout. Minor changes in paddings, etc can occur (but for the better).
* documentation changes to improve ESS tab, table constraints have been lifted & sphinx_rtd_theme to v2.0.0
* upload artifact in gh test runner pinned to 3
* Try to get the number of processors from sched_getaffinity, to avoid using to many in job submissions for example. 1199
* Fix typo in estimateScaleFactor that fixes broken argparsing. 1286

* error handling and cases for bwAverage with >2 samples
* Tick.label deprecation for mpl 3.8
* minimal mpl version is 3.5
* cicd update for pypi push

* requirement cap for matplotlib lifted (changes in plotting can occur)
* nose has been deprecated in favor of pytests
* pytests run with python 3.7 - 3.11
* toml file for installation, requirements, versioning and executables
* planemo tests updated to galaxy 23.1
* custom github action runner deprecated
* deprecation of np types for builtin types
* stricter label checks and validator in galaxy

* new subcommand: Bigwig average 1169
* dendogram of plotCorrelation now matches each cell correctly
* Fix label options
* add pool
* several other bugs fixed: 1159, 1185, 1172, 1181, 1183
* Fix galaxy tests, separate planemo and update pypi push only on tag releases
* upload artifact
* allow 1 or 2 lines diff for bowtie2 program
* change github action to get artifacts
* fix plotPCA
* try to fix old samtools installed
* add forgotten channels
* default chunklength increased for alignmentSieve
* chunklength in alignmentSieve is a CLI argument now
* suppress lack of index warnings from pysam
* fixedStep in bedGraph output to avoid merging bins with equal values

* cmp usage is updated to fit the recent mpl updates.
* The requirements.txt is updated.
* "NA" occurences in plotFingerprint.py have been replaced by numpy.NAN (PR 1002)
* computeMatrixOperations.xml is fixed (brought up in 1003)
* plotly error is fixed. (issue 1013)
* relase version is updated in planemo.sh
* fixed galaxy tests
* A bug is taken care of in computeMatrixOperations.py / dataRange
* in plotProfile.py legen location is changed from auto to best (issue 1042)

* Fixed a small issue in computeGCBias (issue 969)
* Added dataRange to computeMatricOperation to return min,max,median and 10th and 90th percentile.
* Fixed a small typo in bamCompare. (issue 966)
* Save the output matrix of the plotheatmap in a format to be compatible with running plotheatmap on it again.(issue 953)
* Different colors can now be set by user for plotProfile --plotType heatmap (issue 956)
* Added the `auto` option to the zMin and zMax of plotHeatmap. (issue 908)
* Added `--sortUsingSamples` and `--clusterUsingSamples` to the plotHeatmap galaxy wrapper. (issue 976)