Fixed - coverage values at the threshold are now accepted (< instead of <=) - setup now automatically installs scikit-bio (needed for MDS plot)
Changed - the loop in which genome lengths are calculated in d_cluster is changed to prevent errors when running large numbers of genomes
0.5.4
Changed - default coverage method is now larger (tests are updated to reflect this)
Fixed - gANI now properly computes the coverage using the "larger" method - gANI can now tell when it's not installed
0.5.3
Changed - documentation about dependencies changed; versions added as well - changed the way ani averaging is done; substantial speed increase when working with very large secondary clusters - added the dRep version to the log file
0.5.2
Fixed - prodigal now properly threads for gANI
0.5.1
Fixed - Plot 3 (MDS) now prints onto a square grid - Testing suite now launches all tests automatically