Dwiqc

This version includes a more resilient install-containers mode. Specifically, for slow download speeds. Curl downloads timeout after 1 hr which may not be enough time to download the containers over slower connections. Now the download will restart until it is completed, with a limit of 50 hours.

Fixed Lmod dependency bug.

This version has been configured to be usable for any user. See documentation for details. https://dwiqc.readthedocs.io/en/latest/

This release now includes the capability to download the necessary containers using `dwiQC.py install-containers`. Specific install location can be given using `--install-location`. This is the last version of dwiqc that will be tailored to SSBC.

This release includes a --no-tagger feature that enables the user to disable xnattagger. This version can be use by the broader community, given that prequal and qsiprep are installed.

User can now customize prequal and qsiprep commands by editing the prequal.yaml and qsiprep.yaml files found under dwiqc/config

New Usage:

dwiQC.py tandem --label XNAT_SESSION --bids-dir BIDS_DIR --xnat-alias ALIAS --prequal-config --xnat-upload

(or qsiprep-config, or both)

The default value for --prequal-config and --qsiprep-config is True, and it will only search for config files in the appointed place.