Ezcharts

Fixed
- SeqSummary read_length_plot_binwidth override not working in v.13.0.

Changed
- Updated relational plot APIs: Now support bokeh_kwargs, allowing customization of bokeh.figure during initialization.
- ONT style update with re-branding
- MSA start:end now uses bed file format
Added
- Read length plot x-axis initial range max can be set with `read_length_quantile_xend`.

Added
- `si_format` function for formatting numbers.
- SeqSummary histograms show a warning when no aligned reads to plot.
- Added parameter to set data type in `read_files`.
Changed
- Reports have a maximum width.
- Boxplot hover shows summary stats.
- SeqSummary histograms' axis defaults increased to be inclusive of maximum values.
Fixed
- Regression squishing ECharts plots when a different tab is selected.
- SeqSummary histograms' median value no longer converted to an integer.
- SeqSummary min axis range works when set to 0.
- Boxplots can be made with a single array of values.
- Boxplot colours now cycle through the palette for large datasets.
- Icons on pass, fail and unknown badges have a fixed position to prevent overlapping with text.

Fixed
- ValueError: invalid literal for int() with base 10 in `base_yield_plot`
Changed
- Clarify SeqSummary read alignment title and axis label.

Fixed
- Added setuptools to conda package requirements to unbreak package distribution.
Added
- Added setuptools to python package requirements as it is required for runtime use of pkg_resources.

Fixed
- load_modkit_summary function shows the threshold value of any modified base.
Changed
- ONT reports now have burger style navigation.
- SeqSummary dropdown menu shows samples in order.
- Seqviz plot now displays enzymes in a multi-select box.
Added
- `additional_styles` dictionary parameter to allow more style options of div in `EZchart()`
- SeqSummary read_length_plot binwidth can be overridden from default.