Ezcharts

Changed
- Now uses Bokeh as plotting backend for `histplot()`, `lineplot()` and `scatterplot()`.
- Reduced some padding and margins to make the report more compact.
Fixed
- Sankey top rank (superkingdom) counts being affected by subrank filtering.
- Sankey samples in dropdown now appear in alphabetical order.
Added
- `PlotMetaData` function to plot barcharts using a JSON file of nextflow workflow metadata.

Fixed
- The maximum read length reported in the sub-title of `components.fastcat.read_length_plot()` being one bp too large.
Changed
- Data types in demo changed to dropdown list.
- MSA now accepts start and end co-ordinates for partial sequence visualisation.

Added
- MSA visualisation with [pymsaviz](https://github.com/moshi4/pyMSAviz/)
- Plasmid visualisation with [seqviz](https://github.com/Lattice-Automation/seqviz)

Changed
- Navigation bar links now replaced with a dropdown list of links to sections on the report.

Added
- Ability to change height of seq summary plots.
Changed
- Added argument to skip the plotting of accuracy and coverage histograms (`alignment_stats`) in `SeqSummary` and `SeqCompare`.
Fixed
- `color` option not working in `SeqSummary`
- Resizing behaving oddly in some cases

Added
- `SeqCompare` function to compare individual metrics across samples.
Changed
- Allow color override for fastcat standard plots.
- ONT skin.
- `SeqSummary` can display the histograms for accuracy and coverage, if available in the histogram directory.
Fixed
- `bcfstats` component crashing when the `bcftools stats` output has missing sections.