- Fixed glitch that caused addition of an empty flag in the flags column if it was present but empty in the input.
1.6.0
- Stuttermark now writes its annotations to the 'flags' column. - Removed the -c/--column-name option to change the output column name. - Removed the 'ALLELE' and 'UNKNOWN' annotations.
1.5.1
- Don't crash on empty input files. - Shut down cleanly when the output pipe is closed.
1.5.0
- Changed column names 'name' and 'allele' to 'marker' and 'sequence', respectively. WARNING: Stuttermark is now INCOMPATIBLE with output from TSSV, but made compatible with TSSV-Lite and the new, bundled TSSV tool instead.
1.4.0
- Stuttermark now accepts raw sequences and allele names as input, which are automatically rewritten as TSSV-style sequences using a specified library file. - The 'name' column is now optional.
1.3.1
- Fixed glitch that caused addition of an empty flag in the flags column if it was present but empty in the input. - Added -U/--uncall-alleles option, which lets Samplestats remove allele calls from sequences that do not meet the provided criteria.