Fdstools

- Shut down cleanly when the output pipe is closed.

- The -n/--min-abs and -s/--min-per-strand options now accept non-integer
values as well.
- Added six options to control the Table Filtering Options of Samplevis.
- Grouped some options as 'Display Options' in the command line help.

- Changed default value of -n/--min-abs from 15 to 5.
- Added -I/--input2 option, which allows for specifying a file with raw
data points for Stuttermodelvis and Profilevis.
- Added support for creating BGAnalysevis visualisations.

- Fixed a JavaScript crash that would occur in HTML visualisations if the
Marker name filter resulted in an invalid regular expression (e.g., when
the entered value ends with a backslash).
- Reduced Vega graph spec complexity by using the new Rank transform to
position the subgraphs.
- HTML visualisations made with the -O/--online option of the Vis tool will
now contain https URLs instead of http.

- Initial version.



Samplevis
---------

- HTML visualisations now support drawing raw data points on top of the fit
functions. The points can be drawn with an adjustable jitter to reduce
overlap.
- Fixed a JavaScript crash that would occur in HTML visualisations if the
Repeat unit or Marker name filter resulted in an invalid regular
expression (e.g., when the entered value ends with a backslash).
- Reduced Vega graph spec complexity by using the new Rank transform to
position the subgraphs.
- HTML visualisations made with the -O/--online option of the Vis tool will
now contain https URLs instead of http.