Gdsctools

Latest version: v1.0.1

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0.17.1

---------------

* NEWS:

- add test for module gdsc1000, which has been refactored and cleanup

* BUGS:

- Fix GDSC links to fetch drug/genomic feature data sets
- Fix bug in regression.rules pipeline (create missing directory)

0.17

------------
:summary: Fixing bunch of deprecated warnings, working regression
pipeline based on snakemake

* CHANGES and BUG Fixes:

- regression (snakemake pipeline)
- add missing init and regression modules
- starting to use colorlog

* NEWS:

- add regression script to create the snakefile workflow easily

0.16.4

-----------------

* NEWS:

- a snakemake pipeline for the regression analysis
- Report for the regression analysis

0.16.3

----------------

* BUG Fix: 158 infinity are removed in ANOVAReport in the constructor

0.16.2

----------------

* BUG Fix:

- Fix volcano plot and anova results (avoid infinite values)

0.16.1

---------------------

* BUG Fixes

- Fix regression dendogram plot
- Fix bug leading to NA in effect size reported by Carlos P. (private communication)"

* CHANGES:

- Omnibem: drops the NA instead of replacing by ""

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