Girder-large-image

Improvements

- Improve plottable data endpoint to better fetch adjacent items and annotations ([1573](../../pull/1573), [1574](../../pull/1574), [1575](../../pull/1575), [1580](../../pull/1580), [1583](../../pull/1583))
- Support Girder flat-mount paths ([1576](../../pull/1576))
- Lazily import some modules to speed up large_image import speed ([1577](../../pull/1577))
- Create or check large images for each item in a folder ([1572](../../pull/1572))
- Support multiprocessing and pickling with a zarr sink ([1551](../../pull/1551))
- Allow checking for geospatial sources to use a specific source list ([1582](../../pull/1582))
- Read scales from some OME tiff files parsed with the tifffile source ([1584](../../pull/1584))

Changes
- Remove old code that handled old pyproj packages ([1581](../../pull/1581))

Bug Fixes
- Harden marking S3 uploads as large images ([1579](../../pull/1579))

Improvements
- Show a loading spinner on the image display in geojs in girder ([1559](../../pull/1559))
- Better handle images that are composed of a folder and an item ([1561](../../pull/1561))
- Allow specifying which sources are checked with canReadList ([1562](../../pull/1562))
- Added endpoints to get plottable data related to annotations ([1524](../../pull/1524))

Bug Fixes
- Fix a compositing error in transformed multi source images ([1560](../../pull/1560))
- Prevent using vips input in image conversion if vips parses the image as a different size than large_image ([1569](../../pull/1569))

Improvements
- Improved zarr sink metadata handling ([1508](../../pull/1508))
- Speed up decoding jp2k tiff with an optional library ([1555](../../pull/1555))

Changes
- Work with newer python-mapnik ([1550](../../pull/1550))
- Use the new official yaml mime-type of application/yaml ([1558](../../pull/1558))

Bug Fixes
- Fix an issue emitting rectangles in geojson ([1552](../../pull/1552))
- Fix an issue writing zarr channel metadata ([1557](../../pull/1557))

Features
- Add redis as cache backend option ([1469](../../pull/1469))

Improvements
- Better detect available memory in containers ([1532](../../pull/1532))
- Reject the promise from a canceled annotation ([1535](../../pull/1535))
- Disallow certain names from being read by any but specific sources ([1537](../../pull/1537))
- Add the ability to specify the dtype of a multi-source file ([1542](../../pull/1542))
- Handle bounds on openslide sources to handle sparse sources ([1543](../../pull/1543))

Changes
- Log more when saving annotations ([1525](../../pull/1525))
- Thumbnail generation jobs are less blocking ([1528](../../pull/1528), [1530](../../pull/1530))

Bug Fixes
- Annotations are sometimes paged when they shouldn't be ([1529](../../pull/1529))

Improvements
- Improve uint16 image scaling ([1511](../../pull/1511))
- Read some untiled tiffs using the tiff source ([1512](../../pull/1512))
- Speed up multi source compositing in tiled cases ([1513](../../pull/1513))
- Speed up some tifffile and multi source access cases ([1515](../../pull/1515))
- Allow specifying a minimum number of annotations elements when maxDetails is used ([1521](../../pull/1521))
- Improved import of GeoJSON annotations ([1522](../../pull/1522))

Changes
- Limit internal metadata on multi-source files with huge numbers of sources ([1514](../../pull/1514))
- Make DICOMweb assetstore imports compatible with Girder generics ([1504](../../pull/1504))

Bug Fixes
- Fix touch actions in the image viewer in some instances ([1516](../../pull/1516))
- Fix multisource dtype issues that resulted in float32 results ([1520](../../pull/1520))

Improvements
- When writing zarr sinks through the converter, use jpeg compression for lossy data ([1501](../../pull/1501))

Changes
- Improve algorithm sweep example options ([1498](../../pull/1498))

Bug Fixes
- Guard a race condition in vips new_from_file ([1500](../../pull/1500))
- Fix cropping with the zarr sink ([1505](../../pull/1505))