Girder-large-image

Improvements
- Reduce stderr noise in PIL and rasterio sources ([1397](../../pull/1397))
- Harden OME tiff reader ([1398](../../pull/1398))
- Improve checks for formats we shouldn't read ([1399](../../pull/1399))
- Support negative x, y in addTile ([1401](../../pull/1401))
- Add a utility function for getting loggers ([1403](../../pull/1403))
- Get bioformats jar version if bioformats was started ([1405](../../pull/1405))
- Improve thread safety of concurrent first reads using bioformats ([1406](../../pull/1406))
- Read more metadata from DICOMweb ([1378](../../pull/1378))
- Remove logic for determining DICOMweb transfer syntax ([1393](../../pull/1393))
- Speed up tile output ([1407](../../pull/1407))
- Speed up import time ([1408](../../pull/1408))
- Speed up some tile iteration by reducing the chance of multiple image decodes ([1410](../../pull/1410))

Changes
- Use an enum for priority constants ([1400](../../pull/1400))
- Don't automatically flush memcached tile cache on exit ([1409](../../pull/1409))
- Shift where netcdf information is reported ([1413](../../pull/1413))

Bug Fixes
- Fix an issue emitting geojson annotations ([1395](../../pull/1395))
- Fix an issue when tifffile reports no key frame ([1396](../../pull/1396))
- Frame Selector: Auto-Range format for saving presets ([1404](../../pull/1404))

Improvements
- Fix the DICOM limit to say "Series" instead of "Studies" ([1379](../../pull/1379))
- Add token authentication option for DICOMweb ([1349](../../pull/1349))
- Use vips resize rather than reduce to increase speed ([1384](../../pull/1384))
- Added annotation to geojson endpoint and utility ([1385](../../pull/1385))

Changes
- Handle setup_requires deprecation ([1390](../../pull/1390))

Bug Fixes
- Fix an issue applying ICC profile adjustments to multiple image modes ([1382](../../pull/1382))
- Guard against bad tifffile magnification values ([1383](../../pull/1383))
- Frame Selector component: ensure that no color can be assigned twice ([1387](../../pull/1387))
- Remove white space in frame selector internal fields ([1389](../../pull/1389))
- Fix a comparison between integer enums in configured item lists ([1391](../../pull/1391))

Improvements
- Have zarr use read-only mode ([1360](../../pull/1360))
- Use minified geojs ([1362](../../pull/1362))
- Configurable item list grid view ([1363](../../pull/1363))
- Allow labels in item list view ([1366](../../pull/1366))
- Improve cache key guard ([1368](../../pull/1368))
- Improve handling dicom files in the working directory ([1370](../../pull/1370))
- General handling of skipped levels ([1373](../../pull/1373))

Changes
- Update WsiDicomWebClient init call ([1371](../../pull/1371))
- Rename DICOMweb AssetstoreImportView ([1372](../../pull/1372))
- Harden bioformats shutdown ([1375](../../pull/1375))

Bug Fixes
- Default to "None" for the DICOM assetstore limit ([1359](../../pull/1359))
- Fix series detection for some bioformats files ([1365](../../pull/1365), [1367](../../pull/1367))
- Fix time comparison in annotation history check ([1369](../../pull/1369))
- Fix an issue with apply a frame style to ome tiffs ([1374](../../pull/1374))
- Guard against bad tifffile magnification values ([1376](../../pull/1376))

Features
- Add a Zarr tile source (including ome.zarr) ([1350](../../pull/1350))

Improvements
- Style can specify a dtype of 'source' to maintain the original dtype even when compositing frames ([1326](../../pull/1326))
- Max Merge option in Frame Selector ([1306](../../pull/1306), [1330](../../pull/1330), [1336](../../pull/1336))
- Improve tifffile associated image detection ([1333](../../pull/1333))
- Guard against throwing a javascript warning ([1337](../../pull/1337))
- Test on Python 3.12 ([1335](../../pull/1335))
- Added filtering and limit options to the DICOMweb assetstore ([1327](../../pull/1327))
- Support more formats through PIL ([1351](../../pull/1351))

Changes
- Prohibit bioformats and vips from reading mrxs directly ([1328](../../pull/1328))
- Handle Python 3.12 deprecating utcnow ([1331](../../pull/1331))
- Turn down logging about annotation ACLs ([1332](../../pull/1332))
- Add scope to the dicomweb import endpoint access decorator ([1347](../../pull/1347))
- Drop support for Python 3.6 and Python 3.7 ([1352](../../pull/1352))
- Standardize DICOMweb assetstore parameter names/style ([1338](../../pull/1338))

Features
- DICOMweb support, including a Girder assetstore ([1303](../../pull/1303))

Improvements
- Frame selection presets have configurable defaults ([1301](../../pull/1301))
- Improved DICOM metadata extraction ([1305](../../pull/1305))
- Support more region shapes in the annotation widget ([1323](../../pull/1323))

Changes
- Remove a needless guard around getting an icc profile ([1316](../../pull/1316))
- Refactor fetching extra associated images from openslide ([1318](../../pull/1318))
- Minor refactor of some of the internals of the tiff source ([1322](../../pull/1322))

Bug Fixes
- Guard against potential bad event stream timestamp ([1306](../../pull/1306))

Features
- Added a noCache option to opening tile sources ([1296](../../pull/1296))
- Added a display/visible value to the annotation schema ([1299](../../pull/1299))

Improvements
- Band compositing is shown for single band images ([1300](../../pull/1300))

Changes
- Changed the cdn used for the SlideAtlas viewer ([1297](../../pull/1297))

Bug Fixes
- Band compositing wasn't working ([1300](../../pull/1300))