Other
* Bump version: 1.4.0 → 1.4.1. [mzwiessele]
* [setup] added bumpversion tagging again. [mzwiessele]
* [mrd] init updates and added tests. [mzwiessele]
* Merge pull request 356 from SheffieldML/binomial_laplace. [Max Zwiessele]
Binomial laplace 352
* Merge branch 'devel' into binomial_laplace. [Max Zwiessele]
* Added binomial derivative and test. [Alan Saul]
* Merge branch 'devel' into fixed_inputs. [Alan Saul]
* Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel. [Alan Saul]
* Update README.md. [Max Zwiessele]
* Merge branch 'bwengals-devel' into devel. [Max Zwiessele]
* [basisfunc] kernel tests and model tests. [Max Zwiessele]
* Didnt realize last 2 changes went to PR, undoing. [Bill]
* Fixed import issue. [Bill]
* Trying to make gp_kronecker models savable. [Bill]
* Removed Logsumexp() from LogisticBasisFuncKernel, allowing slope parameter to be negative. Also removed unnecessary scipy import. [Bill]
* Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Max Zwiessele]
* Merge pull request 433 from SheffieldML/update_initialize_paramz. [Max Zwiessele]
[init] updated readme
* [init] updated readme. [mzwiessele]
* Merge pull request 432 from SheffieldML/mathDR-studentTprior. [Max Zwiessele]
Mathdr student t prior
* [prior] singleton tested. [mzwiessele]
* [studentT] prior by mathDR. [mzwiessele]
* Removed spectral mixture stuff. [mathDR]
* [inference] rename wrong precision into variance. [Max Zwiessele]
* [plots] rerun baseline. [Max Zwiessele]
* Update README.md. [Max Zwiessele]
* Bump version: 1.3.2 → 1.4.0. [mzwiessele]
* [warped stuff] plotting and normalizer in warped gps. [mzwiessele]
* Bump version: 1.3.1 → 1.3.2. [mzwiessele]
* [paramz] update included. [mzwiessele]
* Bump version: 1.3.0 → 1.3.1. [mzwiessele]
* [appveyor] skip existing twine upload. [mzwiessele]
* Bump version: 1.2.1 → 1.3.0. [mzwiessele]
* Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [mzwiessele]
* Merge pull request 421 from SheffieldML/beckdaniel-wgps_improvements. [Max Zwiessele]
Beckdaniel wgps improvements
* Merge branch 'devel' into beckdaniel-wgps_improvements. [mzwiessele]
* [merge] devel. [mzwiessele]
* Revert "Revert "[kern] Add kernel was swallowing parts fix 412"" [mzwiessele]
This reverts commit 0abb9b835ffeb020410bdf9a1e0532139ffa5cfc.
* Revert "[kern] Add kernel was swallowing parts fix 412" [mzwiessele]
This reverts commit b8867f1552c05244dcd5ba38a7a57b6f1056312c.
* [kern] Add kernel was swallowing parts fix 412. [mzwiessele]
* Merge branch 'devel' into beckdaniel-wgps_improvements. [mzwiessele]
* Merge branch 'wgps_improvements' of https://github.com/beckdaniel/GPy into beckdaniel-wgps_improvements. [mzwiessele]
* Improving coverage and removing py2 print. [beckdaniel]
* Merged last devel. [beckdaniel]
* Removed the check on f(y), it was only useful in logtanh. [beckdaniel]
* Added tests for closed inverse in identity and log. [beckdaniel]
* Changed imports to relative ones. [beckdaniel]
* Replicated the cubic sine example into warped_gp tests for code coverage. [beckdaniel]
* Removed logtanh, put into a new branch. [beckdaniel]
* Added an exception when you input 0 or negative values to logtanh function. [beckdaniel]
* Added a log-tanh function. [beckdaniel]
* Cleaning. [beckdaniel]
* Moved cubic sine from tests to examples. [beckdaniel]
* Merge branch 'devel' of https://github.com/SheffieldML/GPy into wgps_improvements. [beckdaniel]
Merging new devel
* Refactored the numeric inverse into the mother class, to test Identity and Log. [beckdaniel]
* Cleaning. [beckdaniel]
* Added a rate to inverse calculation. [beckdaniel]
* Logistic seems working but more tests are needed. [beckdaniel]
* First try on logistic function. [beckdaniel]
* Doctest on TanhFunction. [beckdaniel]
* Renamed TanhWarpingFunction to TanhFunction. [beckdaniel]
* Some cleaning on warped gp. [beckdaniel]
* Deleted old tanh_warp and renamed warp_tanh_d to warp_tanh. [beckdaniel]
* Cleaning on warping functions. [beckdaniel]
* Cleaning on warping functions. [beckdaniel]
* Added a log warping function. [Daniel Beck]
* Stuff. [beckdaniel]
* Skipping the wgps Snelson's test (comment the skip line to see the plots) [beckdaniel]
* (wpgs) fixing newton-raphson for f_inv and fixing plotting stuff. [beckdaniel]
* [priorizable] small edit to be usable with paramz 0.6.1 and greater. [mzwiessele]
* [priorizable] small edit to be usable with paramz 0.6.1 and greater. [mzwiessele]
* [appveyor] warning on existing whls. [mzwiessele]
* [plotting] small edit. [mzwiessele]
* [readme] added deploy status to readme. [mzwiessele]
* [Add] add kernel swallowed parts fix 412. [mzwiessele]
* Merge pull request 422 from SheffieldML/offset_and_clustering. [Mike Smith]
Offset and clustering: Utility to do clustering (greedy, pairs best clusters until likelihood stops increasing). Also includes a model that has an offset parameter to allow aligning of time series.
* Removing 'threaded' version. [Michael T Smith]
* Push just to rerun testing. [Michael T Smith]
* Don't use message added to cluster code. [Michael T Smith]
* Added threaded option - but this doesn't work due to the global interpreter lock. [Ubuntu]
* Made initial lengthscale!=1 to ensure we're properly testing gradients. [Michael T Smith]
* Modified set code in test to work with python 2 and python 3. [Michael T Smith]
* Corrected mistake in gradients: Was finding d(Xi-Xj)/dOffset instead of dr/dOffset. Fixed by scaling by kernel lengthscale. [Michael T Smith]
* Added GPy import. [Michael T Smith]
* More useful message from testing re offset estimate. [Michael T Smith]
* Corrected v2 missing print brackets. Added test code for new model and util. [Michael T Smith]
* Offset model and clustering utility. [Michael T Smith]
* Adding refs to new clustering and offset model and utility. [Michael T Smith]
* Merge pull request 420 from SheffieldML/deploy. [Max Zwiessele]
Deploy
* Merge pull request 419 from SheffieldML/devel. [Max Zwiessele]
fixed issues
* [merge] [mzwiessele]
* Merge pull request 418 from SheffieldML/plotting_tests. [Max Zwiessele]
Plotting tests and mean funcs
* [secret] coveralls only on travis. [mzwiessele]
* [prod] fix 388. [mzwiessele]
* [stationary] hint at confusing definition in GPy. [mzwiessele]
* [coverage] both coveralls and codecov, showing codecov. [mzwiessele]
* Coveralls token. [mzwiessele]
* Coveralls token in appveyor.yml. [mzwiessele]
* Revert "Revert "[coverage reports] change to coveralls as test"" [mzwiessele]
This reverts commit ee23da6dd9405120bec62402abf7aaa228a87a19.
* Revert "[coverage reports] change to coveralls as test" [mzwiessele]
This reverts commit 040ac72b82b6aa39720abe9817619103892b27a1.
* [coverage reports] change to coveralls as test. [mzwiessele]
* [plotting] last full upadate of baselinge. [mzwiessele]
* [plotting] more test updates and check for errors. [mzwiessele]
* [tests] all tests. [mzwiessele]
* [merge] devel and plotting tests from meanfunc. [mzwiessele]
* [plotting] updated for test skips. [mzwiessele]
* [mean_func] added parameters in additive mean func and tests for mean functions. [mzwiessele]
* Merge branch 'devel' into plotting_tests. [mzwiessele]
* [datasets] rnaseq changed up. [Max Zwiessele]
* [baseline] images adjusted and checked for testing including gplvm. [Max Zwiessele]
* [testsave] saved the testmodel for quicker and more robust plotting. [Max Zwiessele]
* Merge branch 'devel' into plotting_tests. [Max Zwiessele]
* [plotting] adjusting tests for quicker plotting. [Max Zwiessele]
* Bump version: 1.2.0 → 1.2.1. [mzwiessele]
* Update README.md. [Max Zwiessele]
* Merge pull request 415 from SheffieldML/devel. [Max Zwiessele]
deploy
* Bump version: 1.1.3 → 1.2.0. [mzwiessele]
* [travis] not tagged. [mzwiessele]
* Merge pull request 413 from SheffieldML/devel. [Max Zwiessele]
appveyor deploy
* Bump version: 1.1.2 → 1.1.3. [mzwiessele]
* [coverage] default to devel. [mzwiessele]
* Bump version: 1.1.1 → 1.1.2. [mzwiessele]
* Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [mzwiessele]
* Merge branch 'deploy' into devel. [Max Zwiessele]
* Merge pull request 402 from SheffieldML/devel. [Max Zwiessele]
1.0.9 on deploy
* [codecov] default branch. [mzwiessele]
* [appveyor] twine? [mzwiessele]
* [appveyor] elsif ps. [mzwiessele]
* [appveyor] elsif ps. [mzwiessele]
* [appveyor] stop deploy on github. [mzwiessele]
* [appveyor] stop deploy on github. [mzwiessele]
* Bump version: 1.1.0 → 1.1.1. [mzwiessele]
* [appveyor] test deploy and full deploy. [mzwiessele]
* [deploy] branch check. [mzwiessele]
* [deploy] branch check. [mzwiessele]
* [deploy] branch check. [mzwiessele]
* [deploy] branch check. [mzwiessele]
* [deploy] branch check. [mzwiessele]
* [deploy] branch check. [mzwiessele]
* [deploy] branch check. [mzwiessele]
* [deploy] branch check. [mzwiessele]
* [deploy] branch check. [mzwiessele]
* [deploy] branch check. [mzwiessele]
* [version] for github releases? [mzwiessele]
* [secure] yes but not on prs. [mzwiessele]
* [secure] does it actually work? [mzwiessele]
* [secure] does it actually work? [mzwiessele]
* [secure] does it actually work? [mzwiessele]
* [secure] does it actually work? [mzwiessele]
* [appveyor] secure password 3. [mzwiessele]
* [appveyor] secure password 3. [mzwiessele]
* [appveyor] secure password 2. [mzwiessele]
* [appveyor] secure password 2. [mzwiessele]
* [appveyor] secure password. [mzwiessele]
* [appveyor] twine. [mzwiessele]
* [appveyor] echo empty line. [mzwiessele]
* [appveyor] pypirc. [mzwiessele]
* [appveyor] pypirc. [mzwiessele]
* [appveyor] pypirc. [mzwiessele]
* [appveyor] pypirc. [mzwiessele]
* [appveyor] twine upload. [mzwiessele]
* [setup] more setup changes. [mzwiessele]
* [setup] more setup changes. [mzwiessele]
* [setup] more setup changes. [mzwiessele]
* [appveyor] upload is not working? [mzwiessele]
* [appveyor] version in gh releases. [mzwiessele]
* [appveyor] version in gh releases. [mzwiessele]
* [appveyor] use twine. [mzwiessele]
* [appveyor] use twine. [mzwiessele]
* [appveyor] trying out github relesaessese. [mzwiessele]
* [appveyor] on_success. [mzwiessele]
* [tests] skip on climin import error. [mzwiessele]
* [appveyor] build script. [mzwiessele]
* [py33] removed from builds. [mzwiessele]
* [appveyor] tests. [mzwiessele]
* [appveyor] user. [mzwiessele]
* Bump version: 1.0.9 → 1.1.0. [mzwiessele]
* [secure] password added to appveyor. [mzwiessele]
* Merge pull request 408 from mikecroucher/devel. [Mike Croucher]
Automated Windows builds using Appveyor
* Appveyor: Py27 and Py35 builds. [Mike Croucher]
* Another appveyor bug fix. [Mike Croucher]
* Appveyor bug fix. [Mike Croucher]
* Appveyor: Use Miniconda for numpy and scipy. [Mike Croucher]
* Appveyor: Only build the deploy branch. [Mike Croucher]
* First attempt to use appveyor for windows builds. [Mike Croucher]
* Trying to be more specific. [Ricardo Andrade]
* Trying to be more specific. [Ricardo Andrade]
* Merge branch 'deploy' into devel. [Max Zwiessele]
* [py3] iterator .next fixes. [Max Zwiessele]
* [imports] fix 392. [Max Zwiessele]
* [403] fix of inconsistent config naming. [Max Zwiessele]
* Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Max Zwiessele]
* Merge pull request 398 from SheffieldML/integral. [lionfish0]
Integral kernels added
* Modified testing to allow not implemented exceptions in update_gradients_full. [Michael T Smith]
* References integral kernel classes. [Michael T Smith]
* Merge remote-tracking branch 'origin/devel' into integral. [Michael T Smith]
* Merge pull request 397 from avehtari/dev-python3. [Alan Saul]
Python2->Python3
* Merge pull request 4 from alansaul/dev-python3. [Aki Vehtari]
Added test for subarray in util to dev-python3
* Added test for subarray in util. [Alan Saul]
* More Python 3 compatibility fixes. [Aki Vehtari]
* Python2->Python3. [Aki Vehtari]
* Removed references to integral kernels from __init__ [Michael T Smith]
* Improved comments. import future added. Fixed exception. [Michael T Smith]
* New tests for kernel. [Michael T Smith]
* Integral kernels added. [Michael T Smith]
* Integral kernels removed from index (allows proper pull request) [Michael T Smith]
* [travis] updates for the coverage reports. [Max Zwiessele]
* Merge pull request 374 from SheffieldML/gradientsxx. [Max Zwiessele]
Changes in kern.gradients_XX
* [integral] py3 compat. [Max Zwiessele]
* [integral] py3 compatability. [Max Zwiessele]
* [grads x] [Max Zwiessele]
* [grads x] diagonal entries fixed and add kernel adjusted. [Max Zwiessele]
* [dxxdiag] some steps towards the diagonal gradients in xx. [Max Zwiessele]
* [gradsxx] putting tests in, not complete yet! [Max Zwiessele]
* Merge branch 'devel' into gradientsxx. [Max Zwiessele]
* Merged __init__ [Michael T Smith]
* Updates for eq_ode1 and eq_ode2 kernels. [cdguarnizo]
* Add eq_ode1 kern and ibp_lfm model. [cdguarnizo]
* Integral kernels added, these allow 'histogram' or 'binned' data to be modelled. [Michael T Smith]
* Fixed bug, replaced for loops with einsum. [alessandratosi]
* [gradxx] not working with X,X... [mzwiessele]
* [dxx] faster numpy version of the gradients_XX. [mzwiessele]
* Fixed gradients_XX_diag. [alessandratosi]
* Merge branch 'gradientsxx' of github.com:SheffieldML/GPy into gradientsxx. [Max Zwiessele]
* Fixed covariance computation in predict_jacobian. [alessandratosi]
* [gradients xx] getting there. [Max Zwiessele]
* Merge branch devel into gradientsxx. [alessandratosi]
* Fixed bug in kernel_tests for gradients_XX. [alessandratosi]
* [slicing] fixed slicing for second order derivatives. [mzwiessele]
* [slicing] fixed slicing for second order derivatives. [mzwiessele]
* Merge branch 'devel' into gradientsxx. [mzwiessele]
* Bug fix. [alessandratosi]
* Syntax fix. [alessandratosi]
* Merge branch 'devel' of https://github.com/SheffieldML/GPy into gradientsxx. [alessandratosi]
* Modified kernel tests for gradients_XX. [alessandratosi]
* Added kernel tests for gradients_XX. [alessandratosi]
* Update function kern.gradients_XX() to compute cross-covariance terms. [alessandratosi]