--------------------------- - Dysplasia percentages are now tracked throughout agent lifetimes, and CIN grades are defined as properties based on these percentages - Removes all genotypes aside from HPV 16, 18 and a composite 'other high risk' genotype from the defaults - *GitHub info*: PR `507 <https://github.com/amath-idm/hpvsim/pull/507>`__
0.4.12
--------------------------- - Adds documentation and examples for screening algorithms. - *GitHub info*: PR `505 <https://github.com/amath-idm/hpvsim/pull/505>`__
0.4.11
--------------------------- - Adds colposcopy and cytology testing options, along with default values for screening sensitivity and specificity. - Adds a clearance probability for treatment to control the % of treated women who also clear their infection - Removes use_multiscale parameter and sets ms_agent_ratio to 1 by default - *GitHub info*: PR `497 <https://github.com/amath-idm/hpvsim/pull/497>`__
0.4.10
--------------------------- - Change the seed used for running simulations to avoid having random processes in the model run sometimes being correlated with population attributes - Deprecate ``Sim.set_seed()`` - use ``hpu.set_seed()`` instead - Added ``hpvsim.rootdir`` to provide a convenient absolute path to the - Added equality operator for `Result` objects - Exporting simulation results to JSON now includes 2D results (e.g., by genotype) - ``age_pyramid`` and ``age_results`` analyzer argument changed from ``datafile`` to ``data`` since this input supports both passing in a filename or a dataframe - *GitHub info*: PR `485 <https://github.com/amath-idm/hpvsim/pull/485>`__
0.4.9
-------------------------- - Added in high- and low-grade lesions to type distribution results - Changes default duration and rate of dysplasia for hr HPVs - *GitHub info*: PR `479 <https://github.com/amath-idm/hpvsim/pull/482>`__
0.4.8
-------------------------- - Small bug fix to re-enable plots of cytology outcomes by genotype - *GitHub info*: PR `484 <https://github.com/amath-idm/hpvsim/pull/484>`__