Irescue

What's Changed
* Fix invalid escape sequence warning message by bepoli in https://github.com/bodegalab/irescue/pull/19
* Set multiple verbosity level by bepoli in https://github.com/bodegalab/irescue/pull/21
* Implement EM convergence with tolerance threshold of log-likelihood change by bepoli in https://github.com/bodegalab/irescue/pull/20


**Full Changelog**: https://github.com/bodegalab/irescue/compare/v1.1.2...v1.2.0b1

What's Changed
* Enhance compatibility with different versions of python (PR: https://github.com/bodegalab/irescue/pull/18)
* Fix bug causing incompatibility with python 3.8 ([a8a4549](https://github.com/bodegalab/irescue/pull/18/commits/a8a4549917b745759744c8c2393626489d856498))
* Remove support for python 3.7 ([f379595](https://github.com/bodegalab/irescue/pull/18/commits/f379595c23323cd9510b3015b636b88a5e37985a))

**Full Changelog**: https://github.com/bodegalab/irescue/compare/v1.1.1...v1.1.2

New release to force sync with Zenodo. Equivalent to v1.1.0 release.

What's Changed
* Add option "--dumpEC" to write a log table with Equivalence Classes and UMI mismatch corrections (PR: https://github.com/bodegalab/irescue/pull/13)
* Add options --min-bp-overlap and --min-fraction-overlap to set a minimum overlap between read and TE (PR: https://github.com/bodegalab/irescue/pull/14)
* Merge 1.1.0-beta.2 (PR: https://github.com/bodegalab/irescue/pull/16)
* Improve the TE-UMI deduplication by using directed graphs (inspired by umi-tools directional algorithm).
* Use networkx to handle graphs.
* Make the EM procedure compatible with the new deduplication strategy.
* Make EM operations on a numpy matrix to increase performance.
* Minor adjustments to docs and syntax (PR: https://github.com/bodegalab/irescue/pull/17)


**Full Changelog**: https://github.com/bodegalab/irescue/compare/v1.0.3...v1.1.0

What's Changed
* Improve the TE-UMI deduplication by using directed graphs (inspired by umi-tools directional algorithm).
* Use networkx to handle graphs.
* Make the EM procedure compatible with the new deduplication strategy.
* Make EM operations on a numpy matrix to increase performance.

**Full Changelog**: https://github.com/bodegalab/irescue/compare/v1.1.0-beta.1...v1.1.0-beta.2

Enhancements
* Add option "--dumpEC" to write a log table with Equivalence Classes and UMI mismatch corrections (PR: https://github.com/bodegalab/irescue/pull/13)
* Add options --min-bp-overlap and --min-fraction-overlap to set a minimum overlap between read and TE (PR: https://github.com/bodegalab/irescue/pull/14)

**Full Changelog**: https://github.com/bodegalab/irescue/compare/v1.0.3...v1.1.0