Irescue

Latest version: v1.1.2

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1.0.3

Bug fixes
* Fix bug causing few barcodes missing from matrix when using multiple cpus (PR: https://github.com/bodegalab/irescue/pull/7)
* Skip BAM lines without the chosen cell barcode tag (for increased compatibility with Cell Ranger BAM files) (PR: https://github.com/bodegalab/irescue/pull/11)
* Fix bug causing not deduplicating UMIs when some UMI graph configurations occur (PR: https://github.com/bodegalab/irescue/pull/12)

Enhancements
* Add tests (PR: https://github.com/bodegalab/irescue/pull/6)
* Skip multiprocessing when using 1 cpu (should make preprocessing slightly faster) (PR: https://github.com/bodegalab/irescue/pull/5)
* Skip chr if not in rmsk (as above) (PR: https://github.com/bodegalab/irescue/pull/8)
* Better error handling: provide better error description in various situations, such as those described in 1 (PR: https://github.com/bodegalab/irescue/pull/10)


**Full Changelog**: https://github.com/bodegalab/irescue/compare/v1.0.2...v1.0.3

1.0.2

- bugfix: allow the presence of /1 or /2 at the end of read names (closes 1)
- bugfix: allow for more generic naming of TE features in the 4th column of the bed input file (closes 1)

**Full Changelog**: https://github.com/bodegalab/irescue/compare/v1.0.1...v1.0.2

1.0.1

- Add usage and description in `--help`

1.0.0

Initial release

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