Isotools

Latest version: v0.3.4

Safety actively analyzes 638646 Python packages for vulnerabilities to keep your Python projects secure.

Scan your dependencies

Page 3 of 5

0.2.5

* New feature: distinguish noncanonical and canonical novel splice sites for direct repeat hist
* New feature: option to drop partially aligned reads with the min_align_fraction parameter in add_sample_from_bam

0.2.4

* New feature: added option to save read names during bam import
* new feature: gzip compressed gtf output

0.2.3

* Changed assignment of transcripts to genes if no splice sites match.
* Fix: more flexible import of reference files, gene name not required (but id is), introducing "infer_genes" from exon entries of gtf files.
* New function: Transcriptome.remove_filter(filter=[tags])

0.2.2

* Fix: export to gtf with filter features

0.2.1

* Fix: import reference from gtf file
* New feature: Import multiple samples from single bam tagged by barcode (e.g. from single cell data)
* Fix: issue with zero base exons after shifting fuzzy junctions

0.2.0

* restructure to meet PyPI recommendations
* New feature: isoseq.altsplice_test accepts more than 2 groups, and computes ML parameters for all groups

Page 3 of 5

© 2024 Safety CLI Cybersecurity Inc. All Rights Reserved.