* Fix: Issue with noncanonical splicing detection introduced in 0.1.3
* Fix: crash with secondary alignments in bam files during import.
* New feature: Report and skip if alignment outside chromosome (uLTRA issue)
* Fix: import of chimeric reads (secondary alignments have no SA tag)
* Fix: Transcripts per sample in sample table: During import count only used transcripts, do not count chimeric transcripts twice.
* Change: sample_table reports chimeric_reads and nonchimeric_reads (instead of total_reads)
* Change: import of long read bam is more verbose in info mode
* Fix: Bug: import of chained chimeric alignments overwrites read coverage when merging to existing transcript
* Fix: remove_samples actually removes the samples from the sample_table
* Change: refactored add_biases to add_qc_metrics
* fix: property of transcripts included {sample_name:0}
* save the TSS and PAS positions
* New: use_satag parameter for add_sample_from_bam
* Change: use median TSS/PAS (of all reads with same splice pattern) as transcript start/end (e.g. exons[0][0]/exons[-1][1])
* Fix: Novel exon skipping annotation now finds all exonic regions that are skipped.
* change: Default filter of FRAGMENTS now only tags reads that do not use a reference TSS or PAS