Iva

Latest version: v1.0.9

Safety actively analyzes 638699 Python packages for vulnerabilities to keep your Python projects secure.

Scan your dependencies

Page 2 of 5

1.0.3

Now runs kmc in multi-threaded mode by default. To force kmc to use one thread, use the new option --kmc_onethread.

1.0.2

- add --test option to run on test data
- enforce samtools version at least 0.1.19

1.0.1

- Bug fix for iva_qc_make_db --add_to_ref
- Installation easier. Now requires pyfastaq version >= 3.10.0, which no longer depends on numpy.

1.0.0

Important bug fix with libraries without overlapping reads, where contig ends were too aggressively trimmed. Defaults now handle both overlapping (ie fragment length <= 2 x read length) and non-overlapping (ie fragment length > 2 x readlength) libraries.

0.11.7

Default value of max_insert changed from 500 to 800.

Bug fixes:
- reads input file could be invalid and IVA would try to assemble anyway
- now dies more gracefully when no contigs made.

0.11.6

Bug fixes:
- stop trying to repeatedly reuse the same seed sequence
- stop writing tiny contig to final output file

Page 2 of 5

© 2024 Safety CLI Cybersecurity Inc. All Rights Reserved.