Jdaviz

================

New Features
------------

- New rainbow, reversed rainbow, and seismic (blue-red) colormaps for images. [1785]

- Spinner in plot options while processing changes to contour settings. [1794]

- Model fitting plugin can optionally expose the residuals as an additional data collection entry.
[1864, 1891]

- Resetting viewer limits (via ``reset_limits`` or the zoom home button) now accounts for all visible
data layers instead of just the reference data. [1897]

- Linear1D model component now estimates slope and intercept. [1947]

- Model fitting and line analysis plugins provide a warning and prohibit calculating results if the
selected data entry and spectral subset do not overlap on the spectral axis. [1935]

- Model fitting: API and UI to re-estimate model parameters based on current data/subset selection.
[1952]

Cubeviz
^^^^^^^

- Added ability to load plain Numpy array cube. [1773]

- Added Slice plugin player control buttons. [1848]

Imviz
^^^^^

- Warnings in aperture photometry plugin when using raw profile with large subsets. [1801]

- Subset Tools plugin now allows recentering of editable spatial subset. [1823]

- Links control plugin shows a confirmation overlay to clear markers when changing linking type.
[1838]

Mosviz
^^^^^^

- Disable simultaneous row plotting and 1D linking in Mosviz
to substantially decrease load times. [1790]

- Added coordinates display panels for Mosviz viewers. [1795]

- ``load_data`` method can now load JWST NIRCam and NIRSpec level 2 data. [1835]

Specviz
^^^^^^^

- Spectrum viewer now shows X and Y values under cursor. [1759]

- Switch to opt-in concatenation for multi-order x1d spectra. [1659]

Specviz2d
^^^^^^^^^

- Update to be compatible with changes in specreduce 1.3, including FitTrace
with Polynomial, Spline, and Legendre options. [1889]

- Add dropdown for choosing background statistic (average or median). [1922]

API Changes
-----------

Cubeviz
^^^^^^^

- ``CubeViz`` is deprecated, use ``Cubeviz``. [1809]

Imviz
^^^^^

- Simple Aperture Photometry plugin no longer performs centroiding.
For radial profile, curve of growth, and table reporting, the aperture
center is used instead. For centroiding, use "Recenter" feature in
the Subset Tools plugin. [1841]

Mosviz
^^^^^^

- Removed unused ``MosvizProfileView`` viewer class. [1797]

- ``MosViz`` is deprecated, use ``Mosviz``. [1809]

Specviz
^^^^^^^

- ``SpecViz`` is deprecated, use ``Specviz``. [1809]

Bug Fixes
---------

- Console logging is restored for "Desktop Mode" Windows users. [1887]

- Model fitting initial estimates now respect selected subset. [1947, 1954]

Cubeviz
^^^^^^^

- Support for fitting spectral subsets with Cubeviz [1834]

Imviz
^^^^^

- Clearing markers in Catalog Search will only hide them, which improves
"Clear" performance. [1774]

- Adding data will not result in clearing existing markers. [1848]

- ``viewer.center_on()`` now behaves correctly on non-reference data. [1928]

Mosviz
^^^^^^

- ``mosviz_row`` metadata now included in NIRISS-parsed 1D spectra. [1836]

- Now loads NIRCam direct image properly when loading a directory. [1948]

==================

Bug Fixes
---------

- Avoid a non-finite error in model fitting by not passing spectrum uncertainties as
weights if the uncertainty values are all 0. [1880]

- Redshift is no longer reset to zero when adding results from plugins to app. [1915]

Imviz
^^^^^

- Viewer options in some plugins no longer displaying the wrong names. [1920]

- Fixes cropped image layer with WCS linking without fast-approximation, mouseover display
for GWCS now shows when information is outside original bounding box, if applicable. [1908]

Mosviz
^^^^^^

- Prevent color cycling when selecting different objects/rows [1900]

==================

Bug Fixes
---------

- Change box zoom to always maintain aspect ratio. [1726]

- Fixed removing image data from viewer when changing row. [1812]

- Prevent duplicate labels by changing duplicate number appended
to label to max number (of duplicates) plus 1. [1824]

- Layer lettering now supports up to 702 layers. Beyond that, special characters are used. [1850]

- Fix cycler so new data added have different colors [1866]

Cubeviz
^^^^^^^

- Fix spatial-spectral highlighting after adding spectral data set (either manually or by loading
and results from plugins into the spectral-viewer) which had prevented new subsets from being
created. [1856]

Imviz
^^^^^

Mosviz
^^^^^^

- Data unassigned a row is hidden under the subdropdown in the data dropdown. [1798, 1808]

- Missing mosviz_row metadata in NIRISS-parsed 1D spectra now added. [1836]

- Allow Mosviz ``load_data`` method to load only 1D or 2D spectra. [1833]

Specviz
^^^^^^^

Specviz2d
^^^^^^^^^

- Fixed options for peak method in spectral extraction plugin. [1844]

================

New Features
------------

- Add support for nonstandard viewer reference names [1681]

- Centralize data label generation if user does not provide a label with data load. Also
prevent duplicate data labels from being added to data collection. [1672]

Imviz
^^^^^

- Catalogs plugin now supports loading a JWST catalog from a local ECSV file. [1707]

- New "batch_load" context manager to optimize loading multiple images. [1742]

Specviz2d
^^^^^^^^^

- Improved logic for initial guess for position of "Manual" background trace in spectral extraction
plugin. [1738]

- Now supports loading a specific extension of the 2D spectrum file and
transposing data on load. [1705]

- Spectral extraction plugin now supports visualizing and exporting the 1D spectrum associated
with the background region. [1682]

Bug Fixes
---------

- Disable unit conversion if spectral axis is in pixels or if flux
is in counts, respectively. [1734]

- Improved performance when toggling visibility of data layers in data menu. [1742]

Cubeviz
^^^^^^^

- Fixed parsing of data cube without WCS. [1734]

Imviz
^^^^^

- Fixed Simple Aperture Photometry plugin compatibility with astropy v5.1.1. [1769]

Mosviz
^^^^^^

- Fixed toolbar on 2d profile viewer. [1778]

Specviz2d
^^^^^^^^^

- Fixed parser not loading x1d when s2d is provided. [1717]

- Fixed toolbar on 2d spectrum viewer. [1778]

Other Changes and Additions
---------------------------

- Updated example notebooks (except MosvizExample) to use in-flight JWST data. [1680]
- Change RA/Dec significant figures from 4 to 6 in aperture photometry plugin. [1750]

==================

Bug Fixes
---------

- Fix subset selection tool conflicts caused by a duplicate toolbar. [1679]

- Fixed blank tabbed viewers. [1718]

- Prevent `app.add_data_to_viewer` from loading data from disk [1725]

- Fix bug in creating and removing new image viewers from Imviz [1741]

- Updated Zenodo link in docs to resolve to latest version. [1743]

Imviz
^^^^^

- Fixed Compass crashing while open when loading data. [1731]

Specviz2d
^^^^^^^^^

- Fixed padding on logger overlay. [1722]

- Changing the visibility of a data entry from the data menu no longer re-adds the data to the viewer
if it is already present, which avoids resetting defaults on the percentile and/or color or the
layer. [1724]

- Fixed handling of "Manual" background type in spectral extraction plugin. [1737]

==================

- Fixed Citations file to accurately reflect release.