Jdaviz

Latest version: v3.10.2

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2.8

================

New Features
------------

- Added viewer/layer labels with icons that are synced app-wide. [1465]

Cubeviz
^^^^^^^

- The "Import Data" button is hidden after a data cube is loaded into the app [1495]

Mosviz
^^^^^^
- Added ``--instrument`` CLI option to support NIRISS data loading in Mosviz. [1488]

Bug Fixes
---------

- Fix scrolling of "x" button in data menus. [1491]

- Fix plot options colormap when setting colormap manually through API. [1507]

Cubeviz
^^^^^^^

- Cubeviz parser now sets the wavelength axis to what is in the CUNIT3 header [1480]

- Includes spectral subset layers in the layer dropdowns in plot options and fixes behavior when
toggling visibility of these layers. [1501]

Imviz
^^^^^

- Fixed coordinates info panel crashing when HDU extension with
non-celestial WCS is loaded into Imviz together with another
extension with celestial WCS. [1499]

Other Changes and Additions
---------------------------

- Added a more informative error message when trying to load Jdaviz outside of Jupyter. [1481]

2.7.1

==================

Bug Fixes
---------

- Fix updating coordinate display when blinking via click. [1470]

Cubeviz
^^^^^^^

- Replaced deprecated FILETYPE header keyword with EXP_TYPE to identify JWST cubes
for proper MJD-OBS handling. [1471]

- Fixed a bug where having Subset breaks coordinates information display
in image viewers. [1472]

Other Changes and Additions
---------------------------

2.7.0.post1

========================

- Post-2.7 release to fix a PyPi distribution problem.

2.7

================

New Features
------------
- The app and individual plugins can be opened in a new window by clicking a button in the top
right-hand corner. [977, 1423]

- Snackbar queue priority and history access. [1352, 1437]

- Subset Tools plugin now shows information for composite subsets. [1378]

- Plot options are simplified and include an advanced mode to act on multiple viewers/layers
simultaneously. [1343]

- Labels in data menus are truncated to fit in a single line but ensure visibility of extensions.
[1390]

- Data menus now control visibility of layers corresponding to the data entries instead of
loading/unloading the entries from the viewers. Data entries that are unloaded now appear
in an expanded section of the menu and can be re-loaded into the viewer. [1400]

- Several reversed version of colormaps now available for image viewers. [1407]

- Simple zoom "back" button in all viewers. [1436]

Cubeviz
^^^^^^^

- New tool for visualizing spectrum at a pixel's coordinate location
in the image viewer [1317, 1377]

Imviz
^^^^^

- Added the ability to fit Gaussian1D model to radial profile in
Simple Aperture Photometry plugin. Radial profile and curve of growth now center
on source centroid, not Subset center. [1409]

API Changes
-----------

- Default percentile for all image viewers is now 95%, not min/max. [1386]

- Default verbosity for popup messages is now "warnings" but
the history logger is still at "info" so you can see all messages
there instead. [1368]

- In the Color Mode options under Plot Options, "Colormaps" and "One color per layer"
have been renamed to "Colormap" and "Monochromatic," respectively, for all image
viewers. [1406]

- Viz tool display changed to ``viz.show()`` from ``viz.app``. Sidecar no longer returned by
show methods. [965]

Imviz
^^^^^

- In the toolbar, linked box-zoom and linked pan/zoom are now the defaults.
Right-click on the respective button to access single-viewer box-zoom or
single-viewer pan/zoom. [1421]

- ``viewer.set_colormap()`` method now takes Glue colormap name, not
matplotlib name. This is more consistent with colormap options under
Plot Options. [1440]

Bug Fixes
---------

- Fixed HeI-HeII line list loading. [1431]

Cubeviz
^^^^^^^

- Fixed the default thickness of a subset layer in the spectral viewer to remain 1 for
spatial subsets and 3 for spectral subsets. [1380]

- Fixed linking of plugin data to the reference data that was used to create it [1412]

- Fixed coordinates display not showing the top layer information when multiple
layers are loaded into the image viewer. [1445]

Imviz
^^^^^

- Fixed a bug where image loaded via the "IMPORT DATA" button is not
linked to the data collection, resulting in Imviz unusable until
the data are re-linked manually. [1365]

- Fixed a bug where coordinates display erroneously showing info from
the reference image even when it is not visible. [1392]

- Fixed a bug where Compass zoom box is wrong when the second image
is rotated w.r.t. the reference image and they are linked by WCS. [1392]

- Fixed a bug where Line Profile might crash when the second image
is rotated w.r.t. the reference image and they are linked by WCS. [1392]

- Contrast/bias mouse-drag is now more responsive and
calculates contrast in the same way as Glue in Qt mode. [1403]

- Fixed a bug where some custom colormap added to Imviz is inaccessible
via ``viewer.set_colormap()`` API. [1440]

- Fixed a bug where Simple Aperture Photometry plugin does not know
an existing Subset has been modified until it is reselected from
the dropdown menu. [1447]

- Disables the "popout in new window" buttons on the image viewer tabs
in favor of other ways of popping out Jdaviz from notebook. [1461]

Mosviz
^^^^^^

- Data dropdown in the gaussian smooth plugin is limited to data entries from the
spectrum-viewer (excluding images and 2d spectra). [1452]

2.6

================

New Features
------------

- Line list plugin now supports exact-text filtering on line names. [1298]

- Added a Subset Tools plugin for viewing information about defined subsets. [1292]

- Data menus in the viewers are filtered to applicable entries only and support removing generated data from
the app. [1313]

- Added offscreen indication for spectral lines and slice indicator. [1312]


Cubeviz
^^^^^^^

- Cubeviz image viewer now has coordinates info panel like Imviz. [1315]

- New Metadata Viewer plugin. [1325]

Imviz
^^^^^

- New way to estimate background from annulus around aperture
in Simple Aperture Photometry plugin. [1224]

- New curve of growth plot available in Simple Aperture
Photometry plugin. [1287]

- Clicking on image in pan/zoom mode now centers the image to location
under cursor. [1319]

Specviz
^^^^^^^

- Line List Spectral Range filter displays only lines with an observed
wavelength within the range of the spectrum viewer [1327]

Bug Fixes
---------

- Line Lists plugin no longer crashes when a list is removed under
certain conditions. [1318]

Cubeviz
^^^^^^^

- Parser now respects user-provided ``data_label`` when ``Spectrum1D``
object is loaded. Previously, it only had effect on FITS data. [1315]

- Fixed a bug where fitting a model to the entire cube returns all
zeroes on failure. [1333]

Imviz
^^^^^

- Line profile plot in Line Profile plugin no longer affects
radial profile plot in Simple Aperture Photometry plugin. [1224]

- Line profile plot no longer report wrong coordinates on
dithered data that is not the reference data. [1293]

- Radial profile plot in Simple Aperture Photometry plugin
no longer shows masked aperture data. [1224]

- Aperture sum in Simple Aperture Photometry plugin no longer reports
the wrong value in MJy when input data is in MJy/sr. Previously,
it applied number of pixels twice in the calculations, so sum in MJy
with 10-pixel aperture would be off by a factor of 10. This bug did not
affect data in any other units. [1332]

- Markers API now handles GWCS with ICRS Lon/Lat defined instead of
Right Ascension and Declination. [1314]

Specviz
^^^^^^^

- Fixed clearing an identified spectral line when its removed. [1322]

Specviz2d
^^^^^^^^^

- Fixed a regression that caused NIRSpec s2d to stop loading
properly. [1307]

2.5

================

New Features
------------

- Search bar to filter plugins in sidebar. [1253]

Cubeviz
^^^^^^^

- Add ESA pipeline data parser. [1227]

Mosviz
^^^^^^

- Mosviz Desktop App utilizes new directory parsers, which falls back to NIRSpec parser if
no instrument keyword is specified. [1232]

API Changes
-----------

- CLI now takes the layout as a required first positional argument after jdaviz
(``jdaviz cubeviz path/to/file``). [1252]

Bug Fixes
---------

- Fixed clicking in Safari on MacOS when using CTRL-click as right-click. [1262]

Imviz
^^^^^

- No longer issues a Snackbar error message when all data is deselected. [1250]


Other Changes and Additions
---------------------------

- Change default collapse function to sum.
This affects collapsed spectrum in Cubeviz and its Collapse plugin default. [1229, 1237]
- Data dropdowns in plugins are now filtered to only applicable entries. [1221]
- Cube data now has spectral axis last in the backend, to match specutils Spectrum1D
axis order and work with updated glue-astronomy translators. [1174]
- Plugins that create data entries allow overriding the default labels. [1239]
- Automatic defaults for model component IDs and equation editor in model fitting. [1239]
- Help button in toolbar to open docs in a new tab. [1240]
- Snackbar queue handles loading interrupt more cleanly. [1249]
- Reported quantities are rounded/truncated to avoid showing unnecessary precision. [1244]
- Line analysis quantities are coerced so length units cancel and constants are removed from units.
[1261]

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