`ref`
- `kb` now provides a pre-built human index for RNA velocity (`linnarsson`)
- The intronic fasta with the `--lamanno` option now includes 30-base flanking regions.
`count`
- Unfiltered count matrices will always be placed in the `counts_unfiltered` folder.
- If the `--filter` option is specified, the filtered count matrices will be placed in the `counts_filtered` folder.