Kisao

Latest version: v2.34

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2.2

- more Krylov subspace projection methods
- 'type of problem' characteristic is added
- skos:definition annotation is now used to represent definitions (instead of rdfs:comment)
- skos:altLabel annotation is now used to represent synonyms (instead of oboInOwl:Synonym)
- consists of two parts:
-- kisao.owl: the core version containing all but deprecated terms
-- kisao_full.owl: the full version which imports the core KiSAO and also contains deprecated terms.

2.1

- two times more simulation algorithms, than in the previous versions
- characteristic and parameter branches, linked to the algorithms which possess them,
e.g. 'tau-leaping method' 'has parameter' 'tau-leaping epsilon'
- both hierarchical relations between simulation methods,
e.g. 'Poisson tau-leaping method' subClassOf 'tau-leaping method',
and ones representing a complex method switching between several algorithms,
e.g. 'LSODA' uses 'backward differentiation formula'
- consists of two parts:
-- kisao.owl: the core version containing all but deprecated terms
-- kisao_full.owl: the full version which imports the core KiSAO and also contains deprecated terms.

2.0

- the first of the KiSAO versions representing algorithm characteristics as a separate branch of OWL class hierarchy
- algorithms are linked to the characteristics they possess using 'has property' relationship,
e.g. 'Gillespie direct method' 'has property' 'stochastic system behaviour'

1.0

- an old version of KiSAO
- algorithm parameters are not covered
- algorithm subclassing is based on algorithm types, derivation (algorithm derived from another pre-existing one), and characteristics.
- characteristics are represented as subsumptions in algorithm branch, e.g. 'algorithm using adaptive time steps'
- multiple inheritance of algorithms (subsumptions as parents)

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