Libpysal

We closed a total of 85 issues (enhancements and bug fixes) through 27 pull requests, since our last release on 2020-02-01.

Issues Closed
- Standardize libpysal/examples/*.py docstrings (294)
- Fetch (295)
- Mac builds seem to take longer — bump up timeout (273)
- Voronoi_frames function causes jupyter notebook kernel to die (281)
- ENH: allow specific buffer in fuzzy_contiguity (280)
- Return alpha option & use pygeos for alphashaping if available (278)
- add weights writing as a method on weights. (276)
- Docs ci badge (277)
- [rough edge] libpysal.examples w/o internet? (259)
- removing six from ci (275)
- Handle connection errors for remote datasets (274)
- examples directory prevents installing with pyInstaller (263)
- GH-263: Don't implicitly import examples when importing base library (264)
- Error in the internal hack for the Arc_KDTree class inheritance and the KDTree function (254)
- GitHub Actions failures (271)
- Bugfix (255)
- dropping nose in ci/36.yml (270)
- Follow-up To Do for GH Actions (268)
- Polish up GitHub Action residuals (269)
- TEST: turning off 3.6 on github actions (266)
- Initializing complete Github Actions CI (267)
- fix for issue 153 (256)
- DOC: Udpdating citations, minor description editing (265)
- Cleaning up weights/weights.py docs (262)
- Unused code in weights.from_networkx()? (261)
- redirect pysal/934 to libpysal (9)
- defaulting to using the dataframe index as the id set (35)
- Handling coincident points in KNN (23)
- MGWR_Georgia_example.ipynb fails due to different sample data shapes (67)
- Kernel docstring does not mention unique Gaussian kernel behavior (47)
- MGWR_Georgia_example.ipynb missing pickle import statement (69)
- weights.Voronoi is a function, not a class. (99)
- some weights util functions are lost in __ini__.py (121)
- Current weight plot method is time consuming for a large data set (123)
- [ENH][WIP] Adding a `rasterW` to extract `W` from raster and align values (150)
- network kernel weights (151)
- Add `from_sparse` and `from_numpy` methods, to match the other `from_` methods (173)
- Weight Object Question (208)
- ENH: setting up github actions (258)
- deprecate or test shapely_ext (114)
- Tests failures under Python 3.8 (177)
- Update reqs for tests (250)
- Nbdocs (253)
- test_fiiter fails on 3.8 but passes on < 3.8 (249)
- 3.8 (251)
- rebuild docs; (235)
- DOC: Fix invalid section headings. (243)
- Fix syntax errors (242)
- Remove calls to deprecated/removed time.clock. (240)
- Fix and simplify filter_adjlist. (244)
- set up appveyor or circle ci for multiplatform testing (219)
- Nose is unmaintained (241)
- Add appveyor badge (248)
- Appveyor (247)
- correct name for beautifulsoup4 (239)
- REL: version bump for bug fix release (238)
- test_map breakage due to pandas 1.0 deprecation of ufunc.outer (236)
- BUG: ufunc.outer deprecated (237)

Pull Requests
- Standardize libpysal/examples/*.py docstrings (294)
- Fetch (295)
- Mac builds seem to take longer — bump up timeout (273)
- ENH: allow specific buffer in fuzzy_contiguity (280)
- Return alpha option & use pygeos for alphashaping if available (278)
- add weights writing as a method on weights. (276)
- Docs ci badge (277)
- removing six from ci (275)
- Handle connection errors for remote datasets (274)
- GH-263: Don't implicitly import examples when importing base library (264)
- Bugfix (255)
- dropping nose in ci/36.yml (270)
- Polish up GitHub Action residuals (269)
- Initializing complete Github Actions CI (267)
- DOC: Udpdating citations, minor description editing (265)
- Cleaning up weights/weights.py docs (262)
- ENH: setting up github actions (258)
- Update reqs for tests (250)
- Nbdocs (253)
- 3.8 (251)
- DOC: Fix invalid section headings. (243)
- Fix syntax errors (242)
- Fix and simplify filter_adjlist. (244)
- Appveyor (247)
- correct name for beautifulsoup4 (239)
- REL: version bump for bug fix release (238)
- BUG: ufunc.outer deprecated (237)

The following individuals contributed to this release:

- Serge Rey
- James Gaboardi
- Martin Fleischmann
- Dani Arribas-Bel
- Levi John Wolf
- Bryan Bennett
- Jeffery Sauer
- Elliott Sales De Andrade
- Joshua Wagner

This is a bug fix release.

We closed a total of 32 issues (enhancements and bug fixes) through 12 pull requests, since our last release on 2020-01-04.

Issues Closed
- test_map breakage due to pandas 1.0 deprecation of ufunc.outer (236)
- BUG: ufunc.outer deprecated (237)
- raise warning when islands are used in to_adjlist (230)
- Some example datasets are missing documentation (113)
- DOC: Cleaning up docs and docsr for tutorial (229)
- `to_adjlist(remove_symmetric=True)` fails on string-indexed weights. (165)
- AttributeError: 'Queen' object has no attribute 'silent_island_warning' (204)
- 4.2.1 (226)
- Revert "4.2.1" (228)
- 4.2.1 (227)
- DOC: images for notebooks (225)
- 4.2.1 (224)
- 4.2.1 (223)
- duplicate pypi package badge (221)
- 4.2.1 (222)
- REL: 4.2.1 (220)
- libpysal 4.2.0 won't import on Windows (214)
- libpysal 4.2.0 Windows import issue (215)
- Constructing contiguity spatial weights using from_dataframe and from_shapefile could give different results (212)
- fix bug 212 (213)

Pull Requests
- BUG: ufunc.outer deprecated (237)
- raise warning when islands are used in to_adjlist (230)
- DOC: Cleaning up docs and docsr for tutorial (229)
- Revert "4.2.1" (228)
- 4.2.1 (227)
- DOC: images for notebooks (225)
- 4.2.1 (224)
- 4.2.1 (223)
- 4.2.1 (222)
- REL: 4.2.1 (220)
- libpysal 4.2.0 Windows import issue (215)
- fix bug 212 (213)

The following individuals contributed to this release:

- Serge Rey
- Levi John Wolf

This is a bug fix release.

We closed a total of 14 issues (enhancements and bug fixes) through 5 pull requests, since our last release on 2019-12-14.

Issues Closed
- libpysal 4.2.0 won't import on Windows (214)
- libpysal 4.2.0 Windows import issue (215)
- Constructing contiguity spatial weights using from_dataframe and from_shapefile could give different results (212)
- fix bug 212 (213)
- alpha_shapes docs not rendering (216)
- corrected docstrings in cg.alpha_shapes.py (217)
- Updating requirements (211)
- Big tarball (174)
- Fetch (176)

Pull Requests
- libpysal 4.2.0 Windows import issue (215)
- fix bug 212 (213)
- corrected docstrings in cg.alpha_shapes.py (217)
- Updating requirements (211)
- Fetch (176)

The following individuals contributed to this release:

- Serge Rey
- James Gaboardi
- Levi John Wolf

We closed a total of 57 issues (enhancements and bug fixes) through 21 pull requests, since our last release on 2019-09-01.

Issues Closed
- Updating requirements (211)
- Big tarball (174)
- Fetch (176)
- metadata for examples (125)
- DOC: math rendering in sphinx, and members included for W (209)
- (docs) automatically generate docstrings for class members (210)
- (docs) keep file .nojekyll in docs when syncing between docs/ and docsrc/_build/html/ (207)
- (bug) replace silent_island_warning with silence_warnings for weights (206)
- Documentation does not work (205)
- updating cg.standalone.distance_matrix docs (203)
- error message in cg.standalone.distance_matrix() (195)
- improved docs in io.util.shapefile (202)
- [ENH] moving jit import to common.py / improve documentation (201)
- rearrange shapely import in cg.alpha_shapes (199)
- fix quasi-redundant import of shapely (200)
- Remove more relics (from pre-reorg PySAL) (196)
- [BUG] alpha_shapes/shapely import error (197)
- [BUG] correcting shapely import bug (198)
- README.txt refers to pre-reorg PySAL (194)
- remove `distribute_setup.py`? (147)
- requires() decorator for libpysal.cg.alpha_shapes (128)
- decorating functions with requires() (129)
- [WIP] removing unused relics (193)
- necessity of libpysal.common.iteritems()? (191)
- removing iteritems decorator (192)
- Voronoi results in weights of different shape than input points (189)
- BUG: alpha_shape_auto can fail to contain all points in the set. (190)
- WSP(sparse).to_W() has `array`s in weights,neighbors dictionaries, rather than lists. (185)
- Cast arrays as lists (Issue 185) (186)
- BUG: Update for geopandas use of GeometryArray (188)
- Updated documentation error (link incorrectly specified) in README.rst (187)
- Docs: badges for pypi (182)
- development guidelines link failure (178)
- DOCS: moving off rtd (181)
- REL 4.1.1 bf release (180)
- BUG: Updating manifest for additional requirements files (179)

Pull Requests
- Updating requirements (211)
- Fetch (176)
- (docs) automatically generate docstrings for class members (210)
- (docs) keep file .nojekyll in docs when syncing between docs/ and docsrc/_build/html/ (207)
- (bug) replace silent_island_warning with silence_warnings for weights (206)
- updating cg.standalone.distance_matrix docs (203)
- improved docs in io.util.shapefile (202)
- [ENH] moving jit import to common.py / improve documentation (201)
- fix quasi-redundant import of shapely (200)
- Remove more relics (from pre-reorg PySAL) (196)
- decorating functions with requires() (129)
- [WIP] removing unused relics (193)
- removing iteritems decorator (192)
- BUG: alpha_shape_auto can fail to contain all points in the set. (190)
- Cast arrays as lists (Issue 185) (186)
- BUG: Update for geopandas use of GeometryArray (188)
- Updated documentation error (link incorrectly specified) in README.rst (187)
- Docs: badges for pypi (182)
- DOCS: moving off rtd (181)
- REL 4.1.1 bf release (180)
- BUG: Updating manifest for additional requirements files (179)

The following individuals contributed to this release:

- Serge Rey
- Wei Kang
- James Gaboardi
- Levi John Wolf
- Siddharths8212376

This is a bug fix release.

We closed a total of 32 issues (enhancements and bug fixes) through 13 pull requests, since our last release on 2019-07-01.

Issues Closed
- BUG: Updating manifest for additional requirements files (179)

We closed a total of 45 issues (enhancements and bug fixes) through 15 pull requests, since our last release on 2018-10-27.

Issues Closed
- Allow for **kwargs any time there's a weights construction (158)
- Some functions do not support silence_warnings=True (134)
- REL: update changelog (159)
- MAINT: bumping version for a release (157)
- update interactive examples in inline docstrings (122)
- BUG: fix for scipy bump 154 (156)
- Revert "bump supported Python versions and correct lat2SW doctest" (155)
- bump supported Python versions and correct lat2SW doctest (154)
- WIP debugging travis failure (141)
- replace deprecated "fromstring" with "frombytes" (152)
- doctests on weights are failing across the board (48)
- Use Unix line-endings for all files. (149)
- Remove unnecessary executable bits. (148)
- `import pysal` in libpysal/io/iohandlers/dat.py (144)
- enforce strict channel in .travis.yml (143)
- continued failing doctests in libpysal.io (145)
- sphinxcontrib-napoleon is no longer necessary (146)
- pysal --> libpysal docs conv & modernizing .travis.yml (142)
- fix README for pypi (7)
- build_lattice_shapefile swapped arguments (138)
- Accidental create of branch (124)
- Travis errors on Python3.6 PYTHON_PLUS=True (127)
- [WIP] solution for Travis CI failures (140)
- Conda travis (139)
- alphashapes & n<4 (111)
- [WIP] ensure safe returns for small n alphashapes (115)
- swapping ncols <-> nrows in the build_lattice_shapefile function (130)
- docstring for min_threshold_dist_from_shapefile is wrong (120)
- doc: requirements (119)
- REL: version bump for v4.0.1 (118)

Pull Requests
- Allow for **kwargs any time there's a weights construction (158)
- REL: update changelog (159)
- MAINT: bumping version for a release (157)
- update interactive examples in inline docstrings (122)
- BUG: fix for scipy bump 154 (156)
- bump supported Python versions and correct lat2SW doctest (154)
- Use Unix line-endings for all files. (149)
- Remove unnecessary executable bits. (148)
- pysal --> libpysal docs conv & modernizing .travis.yml (142)
- [WIP] solution for Travis CI failures (140)
- [WIP] ensure safe returns for small n alphashapes (115)
- swapping ncols <-> nrows in the build_lattice_shapefile function (130)
- docstring for min_threshold_dist_from_shapefile is wrong (120)
- doc: requirements (119)
- REL: version bump for v4.0.1 (118)

The following individuals contributed to this release:

- Serge Rey
- Wei Kang
- Martin Fleischmann
- James Gaboardi
- Elliott Sales De Andrade
- Levi John Wolf
- Renanxcortes