Mesmerize-core

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0.1.0.b1

Initial beta "release" to get packaging up and running.

What's Changed
* Refactor mcorr funcs by ArjunPutcha in https://github.com/nel-lab/mesmerize-core/pull/1
* get CI working by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/2
* Create yapf check by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/8
* pytests for output paths mcorr, cnmf, cnmfe by clewis7 in https://github.com/nel-lab/mesmerize-core/pull/10
* fix 15 by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/17
* Get com coords by ArjunPutcha in https://github.com/nel-lab/mesmerize-core/pull/9
* fixes 14 by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/18
* Use black formater by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/19
* use CAIMAN_TEMP to store mcorr memmap and then move back to parent dir by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/22
* update CI pipelines by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/27
* View mcorr shifts by ArjunPutcha in https://github.com/nel-lab/mesmerize-core/pull/21
* Yet more pytests by clewis7 in https://github.com/nel-lab/mesmerize-core/pull/29
* update workflows by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/32
* lint with black by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/33
* Fix bug to accept ixs_components param for updating spatial components by ArjunPutcha in https://github.com/nel-lab/mesmerize-core/pull/34
* start docs, basic API documented by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/35
* dev into master by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/36
* example notebooks by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/37
* update example nb by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/42
* Even more pytests by clewis7 in https://github.com/nel-lab/mesmerize-core/pull/43
* making caiman.run() common extension callbacks_finished arg optional by clewis7 in https://github.com/nel-lab/mesmerize-core/pull/45
* master <- dev by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/46
* new spec for batch item params, put algo params in <main> key, tests pass by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/50
* refactor batch item file management by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/51
* cnmf extension for get residuals by clewis7 in https://github.com/nel-lab/mesmerize-core/pull/47
* adding idx_component functionality to reconstructed movie extension by clewis7 in https://github.com/nel-lab/mesmerize-core/pull/54
* fix typo by ArjunPutcha in https://github.com/nel-lab/mesmerize-core/pull/59
* caiman extension to get input movie using pims or caiman.load_memmap by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/60
* master <-- dev by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/64
* splitting reconstructed movie into two functions by clewis7 in https://github.com/nel-lab/mesmerize-core/pull/58
* creating cache for faster access to results of previous cnmf extension calls by clewis7 in https://github.com/nel-lab/mesmerize-core/pull/62
* updating tests to cnmf, still need to upload to zenodo and fix download by clewis7 in https://github.com/nel-lab/mesmerize-core/pull/73
* Api renaming by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/79
* component indices parser, cache bug fix by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/82
* Remove pyqt by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/77
* docstrings, cleanup, more API renaming by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/83
* add comments as column for batch dataframe, tests pass by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/68
* lots-of-stuff <- master by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/84
* custom temporal components for `get_rcm()` and kwargs are optional for `caiman.run()` by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/85
* dfof, eval, other final things by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/87
* better checks for parent data path by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/88
* Doc examples by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/91
* more docs stuff by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/92
* try to make docs autobuild by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/94
* things for windows compatibility by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/95
* added `caiman.remove_item()`, `caiman.get_children()` and `caiman.get_parent()` by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/98
* rename dataframe column "name" to "item_name" by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/99
* started input movie methods, experimental for now by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/101
* fixing threshold for cache test to pass CI pipeline by clewis7 in https://github.com/nel-lab/mesmerize-core/pull/102
* use pandas 1.5.0rc0 by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/104
* added get_params_diffs() feature, works by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/112
* added caiman.save_to_disk() by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/113
* last bits of features before initial beta release by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/114
* organizing stuff for release by kushalkolar in https://github.com/nel-lab/mesmerize-core/pull/110

New Contributors
* ArjunPutcha made their first contribution in https://github.com/nel-lab/mesmerize-core/pull/1

**Full Changelog**: https://github.com/nel-lab/mesmerize-core/commits/v0.1.0.b1

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