=======================
The new 23.0.x series include several prominent changes.
Visualization has been migrated from *MRIQC* and *niworkflows* over to the new *NiReports* project.
This series include a major bugfix with **the optimization of the indexing** of the input BIDS folder,
which was taking large times with sizeable datasets.
Telemetry has also been incorporated with *migas*.
These new series also involve maintenance housekeeping, and includes some relevant bugfixes.
New contributors
----------------
* `arokem <https://github.com/arokem>`__ made their first contribution in `#1040 <https://github.com/nipreps/mriqc/pull/1040>`__
* `yarikoptic <https://github.com/yarikoptic>`__ made their first contribution in `#1057 <https://github.com/nipreps/mriqc/pull/1057>`__
* `esavary <https://github.com/esavary>`__ made their first contribution in `#1047 <https://github.com/nipreps/mriqc/pull/1047>`__
CHANGES
-------
**Full Changelog**: https://github.com/nipreps/mriqc/compare/22.0.6...23.0.0
* FIX: Send metadata extraction to workers (functional workflow) (`1081 <https://github.com/nipreps/mriqc/pull/1081>`__)
* FIX: Plot coronal as main plain for mosaic of rodent images (`1027 <https://github.com/nipreps/mriqc/pull/1027>`__)
* FIX: Address non-empty take from empty axes (anatomical IQMs) (`1077 <https://github.com/nipreps/mriqc/pull/1077>`__)
* FIX: Uniformize building workflow message (anat vs. func) (`1072 <https://github.com/nipreps/mriqc/pull/1072>`__)
* FIX: Move telemetry atexit into entrypoint func (`1067 <https://github.com/nipreps/mriqc/pull/1067>`__)
* FIX: Preempt PyBIDS to spend time indexing non-BIDS folders (`1050 <https://github.com/nipreps/mriqc/pull/1050>`__)
* FIX: Update T1w metrics (`1063 <https://github.com/nipreps/mriqc/pull/1063>`__)
* FIX: Resource monitor would not ever start tracking (`1051 <https://github.com/nipreps/mriqc/pull/1051>`__)
* ENH: Add DataLad getter to inputs of functional workflows (`1071 <https://github.com/nipreps/mriqc/pull/1071>`__)
* ENH: Add migas telemetry (`1036 <https://github.com/nipreps/mriqc/pull/1036>`__)
* ENH: Add codespell automation: config, action, and typos fixed (`1057 <https://github.com/nipreps/mriqc/pull/1057>`__)
* MAINT: Update *NiReports* calls to upcoming interfaces API (`1078 <https://github.com/nipreps/mriqc/pull/1078>`__)
* MAINT: Pacify codespell (`1080 <https://github.com/nipreps/mriqc/pull/1080>`__)
* MAINT: Conclude porting of reportlets into *NiReports* (`1068 <https://github.com/nipreps/mriqc/pull/1068>`__)
* MAINT: Migrate to hatchling (`1070 <https://github.com/nipreps/mriqc/pull/1070>`__)
* MAINT: Pin PyBIDS 0.15.6 (culminating 1050) (`1069 <https://github.com/nipreps/mriqc/pull/1069>`__)
* MAINT: Update niworkflows pin to support newer ANTs releases (`1047 <https://github.com/nipreps/mriqc/pull/1047>`__)
* MAINT: Fix minor aspects of WebAPI deployment on CircleCI (`1064 <https://github.com/nipreps/mriqc/pull/1064>`__)
* MAINT: Update CircleCI executor and use built-in docker-compose (`1061 <https://github.com/nipreps/mriqc/pull/1061>`__)
* MAINT: Rotate CircleCI secrets and setup up org-level context (`1046 <https://github.com/nipreps/mriqc/pull/1046>`__)
* DOC: Update documentation with the new carpet plot (`1045 <https://github.com/nipreps/mriqc/pull/1045>`__)
* DOC: Complete the documentation of ``summary_stats()`` (`1044 <https://github.com/nipreps/mriqc/pull/1044>`__)
* DOC: Fixes a couple of broken links to the *nipype* documentation (`1040 <https://github.com/nipreps/mriqc/pull/1040>`__)
.. admonition:: Author list for papers based on *MRIQC* 23.0 series
As described in the `Contributor Guidelines
<https://www.nipreps.org/community/CONTRIBUTING/#recognizing-contributions>`__,
anyone listed as developer or contributor may write and submit manuscripts
about *MRIQC*.
To do so, please move the author(s) name(s) to the front of the following list:
Zvi Baratz \ :sup:`1`\ ; Christopher J. Markiewicz \ :sup:`2`\ ; Eilidh MacNicol \ :sup:`3`\ ; Dylan Nielson \ :sup:`4`\ ; Jan Varada \ :sup:`5`\ ; Ross W. Blair \ :sup:`2`\ ; Céline Provins \ :sup:`6`\ ; William Triplett \ :sup:`7`\ ; Mathias Goncalves \ :sup:`2`\ ; Nikita Beliy \ :sup:`8`\ ; John A. Lee \ :sup:`9`\ ; Ursula A. Tooley \ :sup:`10`\ ; James D. Kent \ :sup:`11`\ ; Yaroslav O. Halchenko \ :sup:`12`\ ; Bennet Fauber \ :sup:`13`\ ; Taylor Salo \ :sup:`14`\ ; Michael Krause \ :sup:`15`\ ; Pablo Velasco \ :sup:`16`\ ; Thomas Nichols \ :sup:`17`\ ; Adam Huffman \ :sup:`18`\ ; Johannes Achtzehn \ :sup:`19`\ ; Joke Durnez \ :sup:`2`\ ; Satrajit S. Ghosh \ :sup:`20`\ ; Asier Erramuzpe \ :sup:`21`\ ; Benjamin Kay \ :sup:`22`\ ; Daniel Birman \ :sup:`2`\ ; Elodie Savary \ :sup:`23`\ ; McKenzie P. Hagen \ :sup:`24`\ ; Michael G. Clark \ :sup:`25`\ ; Patrick Sadil \ :sup:`26`\ ; Rafael Garcia-Dias \ :sup:`27`\ ; Adam G. Thomas \ :sup:`28`\ ; Russell A. Poldrack \ :sup:`2`\ ; Ariel Rokem \ :sup:`29`\ ; Oscar Esteban \ :sup:`30`\ .
Affiliations:
1. Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
2. Department of Psychology, Stanford University, CA, USA
3. Department of Neuroimaging, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK
4. Section on Clinical and Computational Psychiatry, National Institute of Mental Health, Bethesda, MD, USA
5. Functional MRI Facility, National Institute of Mental Health, Bethesda, MD, USA
6. Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland
7. University of Florida: Gainesville, Florida, US
8. CRC ULiege, Liege, Belgium
9. Quansight, Dublin, Ireland
10. Department of Neuroscience, University of Pennsylvania, PA, USA
11. Department of Psychology, University of Texas at Austin, TX, USA
12. Psychological and Brain Sciences Department, Dartmouth College, NH, USA
13. University of Michigan, Ann Arbor, USA
14. Department of Psychology, Florida International University, FL, USA
15. Max Planck Institute for Human Development, Berlin, Germany
16. Center for Brain Imaging, New York University, NY, USA
17. Oxford Big Data Institute, University of Oxford, Oxford, GB
18. Department of Physics, Imperial College London, London, UK
19. Charité Berlin, Berlin, Germany
20. McGovern Institute for Brain Research, MIT, MA, USA; and Department of Otolaryngology, Harvard Medical School, MA, USA
21. Computational Neuroimaging Lab, BioCruces Health Research Institute
22. Washington University School of Medicine, St.Louis, MO, USA
23. Department of Radiology, Lausanne University Hospital and University of Lausanne, Switzerland
24. Psychology Department, University of Washington, Seattle, WA, USA
25. National Institutes of Health, USA
26. Johns Hopkins Bloomberg School of Public Health, MD, USA
27. Institute of Psychiatry, Psychology & Neuroscience, King's College London, London, UK
28. Data Science and Sharing Team, National Institute of Mental Health, Bethesda, MD, USA
29. The University of Washington eScience Institute, WA, USA
30. Department of Radiology, Lausanne University Hospital and University of Lausanne