Mriqc

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* ENH: Reafactor of the Dockerfile to improve transparency, reduce size, and enable injecting code in Singularity (`457 <https://github.com/nipreps/mriqc/pull/457>`__)
* ENH: Make more the memory consumption estimates of each processing step more conservative to improve robustness (`456 <https://github.com/nipreps/mriqc/pull/456>`__)
* FIX: Minor documentation cleanups (`461 <https://github.com/nipreps/mriqc/pull/461>`__)

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* ENH: Optional ICA reports for identifying spatiotemporal artifacts (`412 <https://github.com/nipreps/mriqc/pull/412>`__)
* ENH: Add --profile flag (`435 <https://github.com/nipreps/mriqc/pull/435>`__)
* ENH: Crashfiles are saved in plain text to improve portability (`434 <https://github.com/nipreps/mriqc/pull/434>`__)
* FIX: Fixes EPI mask erosion (`442 <https://github.com/nipreps/mriqc/pull/442>`__)
* ENH: Make FSL and AFNI motion correction more comparable by using the same scheme for defining the reference image (`444 <https://github.com/nipreps/mriqc/pull/444>`__)
* FIX: Temporarily disabling T1w quality classifier until it can be retrained on new measures (`447 <https://github.com/nipreps/mriqc/pull/447>`__)

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* ENH: Revise Docker paths (`429 <https://github.com/nipreps/mriqc/pull/429>`__)
* FIX: Greedy participant selection (`426 <https://github.com/nipreps/mriqc/pull/426>`__)
* FIX: Pin pybids to new version 0.1.0 (`427 <https://github.com/nipreps/mriqc/pull/427>`__)
* FIX: Amends sloppy PR 425 (`428 <https://github.com/nipreps/mriqc/pull/428>`__)

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* ENH: Add mriqc version and input image hash to IQMs json file (`432 <https://github.com/nipreps/mriqc/pull/432>`__)
* FIX: Affine and warp transforms are now applied in the correct order (`431 <https://github.com/nipreps/mriqc/pull/431>`__)

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* FIX: BOLD reports clipped IQMs after spikes_num (`425 <https://github.com/nipreps/mriqc/pull/425>`__)
* FIX: Unicode error writing group reports (`424 <https://github.com/nipreps/mriqc/pull/424>`__)
* FIX: Respect Nifi header in fMRI conform node (`415 <https://github.com/nipreps/mriqc/pull/415>`__)
* DOC: Deep revision of documentation (411, 416)
* ENH: Added sphinx extension to plot workflow graphs (`411 <https://github.com/nipreps/mriqc/pull/411>`__)
* FIX: Removed repeated bias correction on anatomical workflows (`410 <https://github.com/nipreps/mriqc/pull/410>`__)
* FIX: Race condition in bold workflow when using shared workdir (`409 <https://github.com/nipreps/mriqc/pull/409>`__)
* FIX: Tests (408, 407, 405)
* FIX: Remove CDN for group level reports (`406 <https://github.com/nipreps/mriqc/pull/406>`__)
* FIX: Unused connection, matplotlib segfault (403, 402)
* ENH: Skip SpikeFFT detector by default (`400 <https://github.com/nipreps/mriqc/pull/400>`__)
* ENH: Use float32 (`399 <https://github.com/nipreps/mriqc/pull/399>`__)
* ENH: Spike finder performance improvoments (`398 <https://github.com/nipreps/mriqc/pull/398>`__)
* ENH: Basic T2w workflow (`394 <https://github.com/nipreps/mriqc/pull/394>`__)
* ENH: Re-enable 3dvolreg (`390 <https://github.com/nipreps/mriqc/pull/390>`__)
* ENH: Add T1w classifier (`389 <https://github.com/nipreps/mriqc/pull/389>`__)

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* FIX: Remove non-repeatable step from pipeline (`369 <https://github.com/nipreps/mriqc/pull/369>`__)
* ENH: Improve group level command line, with more informative output when no IQMs are found for a modality (`372 <https://github.com/nipreps/mriqc/pull/372>`__)
* ENH: Make group reports self-contained (`333 <https://github.com/nipreps/mriqc/pull/333>`__)
* FIX: New mosaics, based on old ones (361, 360, 334)
* FIX: Require numpy>=1.12 to avoid casting problems (`356 <https://github.com/nipreps/mriqc/pull/356>`__)
* FIX: Add support for acq and rec tags of BIDS (`346 <https://github.com/nipreps/mriqc/pull/346>`__)
* DOC: Documentation updates (`350 <https://github.com/nipreps/mriqc/pull/350>`__)
* FIX: pybids compatibility "No scans were found" (340, 347, 342)
* ENH: Rewrite PYTHONPATH in docker/singularity images (`345 <https://github.com/nipreps/mriqc/pull/345>`__)
* ENH: Move metadata onto the bottom of the individual reports (`332 <https://github.com/nipreps/mriqc/pull/332>`__)
* ENH: Don't include MNI registration report unlesS --verbose-reports is used (`362 <https://github.com/nipreps/mriqc/pull/362>`__)