Ms2pip

What's Changed
* Timstof models by ArthurDeclercq in https://github.com/compomics/ms2pip/pull/203


**Full Changelog**: https://github.com/compomics/ms2pip/compare/v4.0.0-dev2...v4.0.0-dev3

**Full Changelog**: https://github.com/compomics/ms2pip/compare/v4.0.0-dev1...v4.0.0-dev2

**Full Changelog**: https://github.com/compomics/ms2pip/compare/v4.0.0-dev0...v4.0.0-dev1

Early development release of v4.0.0, which includes:
- Fully refactored Python API
- New command-line interface
- Support for all file formats readable by psm_utils
- Support for both MGF and mzML spectrum files
- Support for ProForma 2.0 peptide notation (no modification configuration required anymore)
- Support for multiple peptides/PSMs per spectrum
- ...

Added

- New timsTOF 2024 model added (now alias for `timsTOF`) by ArthurDeclercq in https://github.com/compomics/ms2pip/pull/211


**Full Changelog**: https://github.com/compomics/ms2pip/compare/v3.12.0...v3.13.0

What's Changed
* Add code and figures for 2023 NAR manuscript ArthurDeclercq in https://github.com/compomics/ms2pip/pull/196 and https://github.com/compomics/ms2pip/pull/197
* Backport timsTOF model from 4.0 dev release to 3.12 release by RalfG in https://github.com/compomics/ms2pip/pull/206


**Full Changelog**: https://github.com/compomics/ms2pip/compare/v3.11.0...v3.12.0