Musclex

Updates

* Persist Rotations in QF
* Rotations are now persisted in the Quadrant Folding (QF) module.
* Measure Distance in Graph for XV
* Distance measurement functionality added to the graph in the XV module.
* Fix File Manager
* Various fixes applied to the file manager for improved stability and performance.
* Error Message for Invalid Log Trace File in XV
* Added an error message to handle invalid log trace files in the XV module.
* Updated QF Documentation
* Documentation updated to include the fold image option in the QF module.
* Headless Mode Fixes
* Multiple fixes applied for headless mode operations:
* Image mask tool now displays images correctly.
* Progress bar issues fixed on quadrant folding.
* Double zoom functionality added to the XV module.
* Minor Issue Fix
* Addressed a minor issue in the application.
* Fixed H5 Files Crashing in the Next Series
* Resolved a crash issue related to H5 files in the subsequent series.

Updates
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- fixed library constraints causing installation with versions of python >= 3.11 to fail when installing musclex with pip
- fixed library versions in setup.py causing tests to fail with pip version

Updates
- Implementation of background subtraction functions in Python, replicating fortran functions in QuadrantFolder

Updates
- Bug fixes (PT functionalities, QF and EQ bugs...)
- PT: Headless mode, center and rotation tools, interface improvements
- EQ: Rmax added to crop histograms and remove outside artifacts
- QF: ROI improvements
- H5 files processing improved : everything can be done directly on H5 files without converting
- Documentation update

Updates
- Bug fixes (Calib buttons, XV zoom, QF background subtraction and cache...)
- Memory leak fixed
- XV: Inpainting on the gaps available (experimental)
- EQ: Extra peak option added to improve fitting, Blank image and mask improved, Better interaction with its cache if the images are already processed
- PT: Blank Image and mask added, with mask threshold
- EQ, QF and DI Headless: Multiprocessing on folders
- Documentation update and performance reports on MuscleX

Updates
- Bug fixes (background substraction, installers...)
- New version of Add Intensities Multiple Experiments (former Add Intensities), easier to understand and use
- New version of Add Intensities Single Experiment (former Image Merger), easier to understand and use
- New module added to MuscleX: X-Ray Viewer, able to view images and h5 files easily, display a slice, a box, and play the file
- Double Zoom function added to all modules with calibration, and working with all buttons
- Documentation update