Nibabies

Latest version: v25.0.1

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23.0.0

=========================
New year, new *NiBabies* minor series!
Some of the highlights of this release include:
- New run-wise BOLD reference generation, prioritizing single-band references if available, unless avoided with the `--ignore sbrefs` flag.
- New output: Preprocessed T2w in T1w space.

A full list of changes can be found below.

Full Changelog
* ENH: Runwise bold reference generation (268)
* ENH: Add preprocessed T2w volume to outputs (271)
* MAINT: Drop versioneer for hatch backend, fully embrace pyproject.toml (265)
* MAINT: Rotate CircleCI secrets and setup up org-level context (266)
* CI: Bump convenience images, limit datalad (267)
* FIX: Remove legacy CIFTI variant support (264)

22.2.0

==========================
The final *NiBabies* minor series of 2022!
Some highlights of the new additions in this release series includes:
- surface morphometrics outputs, including cortical thickness
- T2star maps for multiecho data, projected to target output spaces

This series will be the last to support Python 3.7.

A full list of changes can be found below.

Full Changelog
* FIX: Remove cortex masking during vol2surf sampling (258)
* ENH: Improve migas telemetry (257)
* CI: GitHub actions update (256)
* ENH: Add morphometric outputs (255)
* ENH: Output T2star maps for multiecho data (252)
* FIX: Use the binarized output from the brain extraction (246)
* DOC: Add long description including background/significance (243)
* CI: Fix docker credential error (244)
* DOC: Advertise nipreps community pages, add section on contributions (242)

22.1.3

===========================
This patch release includes a vital fix for susceptibility distortion correction on multi-echo data.

* FIX: Field name for multi-echo fieldmap correction (233)

22.1.2

========================
This patch release includes a fix to FreeSurfer version detection, which was causing `recon-all` to use outdated flags.

22.1.1

========================
A bugfix release that includes missing files needed to run `infant_recon_all`.

Full Changelog
* FIX: Add missing shared object for `infant_recon_all` (231)
* RF: `migas` reporting (230)

22.1.0

=======================
A new minor release! The 22.1.x series of *NiBabies* includes:

- Improved alignment between FreeSurfer outputs and processed anatomical.
- Decreased memory usage while running across multiple processes (default).
- Fix to multi-echo processing in cases where an optimally combined file of all echoes was missing.
- Fix to the subcortical CIFTI to be in *LAS* orientation.

Full Changelog
* FIX: Correct fsnative <-> anatomical transforms (223)
* FIX: Vastly improve multi-echo handling (220)
* ENH: Add migas telemetry to nibabies (226)
* ENH: Add interface for reorienting images (229)
* DOCKER: Bump Python to 3.9 (221)
* RF/ENH: Rework workflow generation (219)

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