Octue

Summary
Allow the input manifest sent to a child service to reference local files if the user confirms that the child will have access to them. This is useful if there are several children running on a single machine (or several machines with a shared filesystem) that produce files so large that it would cost too much or take too long to upload and download these from cloud storage repeatedly. A good example of this might be running heavy-computation/big data children on a high-performance computing cluster.

<!--- START AUTOGENERATED NOTES --->
Contents

New features
- [x] Allow input manifests referencing local files to be used if the files can be accessed by the child and the `allow_local_files` parameter is `True`

Testing
- [x] Loosen deprecation warning test

<!--- END AUTOGENERATED NOTES --->

Quality Checklist

- [x] New features are fully tested (No matter how much Coverage Karma you have)

<!--- SKIP AUTOGENERATED NOTES --->
Contents

Fixes
- [x] Make `OrderedMessageHandler.handle_messages` work with no timeout

<!--- END AUTOGENERATED NOTES --->

Summary
Simplify Google Pub/Sub retries and restrict them to transient errors, specifically removing retries for `NotFound` errors (these were triggering many unneeded retries on Google Cloud Run). This also stops the retry schedule being proportional to the timeout for waiting for an answer to a question, which could lead to very long retry schedules for large timeouts (e.g. for questions that involve long analyses).

<!--- SKIP AUTOGENERATED NOTES --->
Contents

Enhancements
- [x] Add `timeout` parameter to `Service.ask`

Fixes
- [x] Only retry transient errors in Google Pub/Sub `Service` and `GooglePubSubHandler`

<!--- START AUTOGENERATED NOTES --->
Contents

Fixes
- [x] Ensure crc32c hash calculation for cloud upload fidelity check works for binary files

Testing
- [x] Make deprecation warning test less stringent

<!--- END AUTOGENERATED NOTES --->

<!--- START AUTOGENERATED NOTES --->
Contents

Fixes
- [x] Fix error messages about uppercase characters in tags and labels

<!--- END AUTOGENERATED NOTES --->

Summary
Ensure exceptions with multiple arguments of any type are formatted and sent correctly to the asking service by the answering service.

<!--- START AUTOGENERATED NOTES --->
Contents

Fixes
- [x] Format answerer exceptions properly when sending to asker

<!--- END AUTOGENERATED NOTES --->