Octue

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Contents

Enhancements
- [x] Forward deployment configuration errors to asker from Cloud Run (errors raised in the analysis are already forwarded)

Operations
- [x] Add `enhancement` branch prefix type to pre-commit config

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Contents

Fixes
- [x] Allow local metadata values to override cloud values if provided at `Datafile` instantiation

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Contents

Operations
- [x] Use new pull request description workflow
- [x] Use latest conventional commits package and update workflow

Summary
Add the option to stream the responding service logs to the asker via Google Cloud Pub/Sub. The asker then adds `[REMOTE]` to the start of the log messages and handles them with its own log handlers. The scientist can turn this option on or off each time they ask one of their analysis's children a question.

Contents

Enhancements
- [x] Add `GooglePubSubHandler`, which publishes log records to a Google Pub/Sub topic
- [x] Add option to send log messages created during the running of an analysis in `Service.answer` to the answer topic
- [x] Allow asker to receive and handle any number of non-final-response messages before it deletes the answer topic and subscription
- [x] Allow easy modular addition of new message handlers
- [x] Make the asking service handle log messages forwarded to it by the responding service
- [x] Ensure the asker handles pub/sub messages in the order they were sent by the responder, not the order they were received - this ensures remote log messages are always printed in order and before the final result is logged as received
- [x] Get asker to log receipt of messages of unknown types
- [x] Improve `Service` log messages
- [x] Always send analysis log messages to `stderr` as well as optionally sending them to the given log handler in `Runner.run`

Fixes
- [x] Apply formatter to any handler passed to `apply_log_handler`
- [x] Fix local log notification of logs being streamed to a remote URI
- [x] Add `USE_OCTUE_LOG_HANDLER` environment variable to opt-in to octue log handler (default value opts out) so that importing `octue` doesn't add a potentially unwanted log handler

Refactoring
- [x] Rename `logging_handers` module to `log_handlers`
- [x] Move `log_level` and `log_handler` parameters from `Runner.__init__` to `Runner.run` and update usages
- [x] Factor out pulling of messages from a subscription in `Service`
- [x] Remove thread and process information from logging context

Operations
- [x] Fix `mkver.conf` so new features trigger a minor version increase

Documentation
- [x] Update and condense some docstrings

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Quality Checklist
- [x] New features are fully tested (No matter how much Coverage Karma you have)

Contents

Enhancements
- [x] Add shortcut for equals filter

Fixes
- [x] Ensure all defined types of a `Filterable`'s attributes have `equals` and `is` filters
- [x] Treat `KeyError`s and `TypeError`s equally in `getattr_or_subscribe`

Contents

Enhancements
- [x] Allow new datafiles to be created in cloud without local file