Ome-model

Java

* Bump logback dependencies to `ch.qos.logback:logback-core:1.2.9` and `ch.qos.logback:logback-classic:1.2.9` ([160](https://github.com/ome/ome-model/pull/160))
* Bump ome-common dependency to `org.openmicroscopy:ome-common:6.0.9`

Documentation

* Update link to TIFF standard ([157](https://github.com/ome/ome-model/pull/157))
* Add XSLT transformations page ([154](https://github.com/ome/ome-model/pull/154))
* Add reference to javadoc.io ([153](https://github.com/ome/ome-model/pull/153))

Infrastructure

* Add JDK17 to the GitHub workflows testing matrix ([159](https://github.com/ome/ome-model/pull/159))

Python

* ome_model: add support for setting physical sizes and units [151](https://github.com/ome/ome-model/pull/151)

Documentation

* Exclude external link failing the linkcheck [150](https://github.com/ome/ome-model/pull/150)

Specification

* 2008-09 to 2009-09 XSLT transforms: Fix loss of CustomAttributes [145](https://github.com/ome/ome-model/pull/145)

Java

* MetadataConverter: Fix dropping of WellAnnotationRefs during conversion [131](https://github.com/ome/ome-model/pull/131)

Python

* ome_model: do not use mutable default arguments [149](https://github.com/ome/ome-model/pull/149)

Infrastructure

* Dependencies: bump ome-common to 6.0.7 and logback-classic/logback-core to 1.2.0
* Remove legacy Appveyor configuration [148](https://github.com/ome/ome-model/pull/148)
* Exclude broken links to www.fei.com [141](https://github.com/ome/ome-model/pull/141)

Java

* OMEModelImpl: do not permit the addition of null references [125](https://github.com/ome/ome-model/pull/125)

Documentation

* Fix external reference to XML validator [137](https://github.com/ome/ome-model/pull/137)

Infrastructure

* Switch to GitHub workflows
* Python 3.9 support: upgrade to Genshi 0.7.5 and consume upstream package [127](https://github.com/ome/ome-model/pull/127) [#138](https://github.com/ome/ome-model/pull/138)

Python

* Fix PyPI deployment [124](https://github.com/ome/ome-model/pull/124)

Python

* Allow version introspection [123](https://github.com/ome/ome-model/pull/123)
* Add support for population of plane metadata [122](https://github.com/ome/ome-model/pull/122)
* Ensure stdout works in Jupyter Notebooks [121](https://github.com/ome/ome-model/pull/121)
* Make channel names and color optional [120](https://github.com/ome/ome-model/pull/120)