Petab

Latest version: v0.5.0

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0.1.24

* Added method to generate condition-specific SBML models by dweindl in
https://github.com/PEtab-dev/libpetab-python/pull/108
* GHA: Regular package installation instead of -e by dweindl in
https://github.com/PEtab-dev/libpetab-python/pull/106
* Fixed unclosed file warnings by dilpath in
https://github.com/PEtab-dev/libpetab-python/pull/107

**Full Changelog**: https://github.com/PEtab-dev/libpetab-python/compare/v0.1.23...v0.1.24

0.1.23

* Added command line interface for plotting by dweindl in
https://github.com/PEtab-dev/libpetab-python/pull/98
* Fixed petab.visualize.data_overview.create_report by dweindl in
https://github.com/PEtab-dev/libpetab-python/pull/96,
https://github.com/PEtab-dev/libpetab-python/pull/104
* Vis: Fixed cropped errorbars by dweindl in
https://github.com/PEtab-dev/libpetab-python/pull/99
* Fixed pandas deprecation warning by dweindl in
https://github.com/PEtab-dev/libpetab-python/pull/103

... and other changes by plakrisenko, dweindl

**Full Changelog**: https://github.com/PEtab-dev/libpetab-python/compare/v0.1.22...v0.1.23

0.1.22

* Allow zero bounds for log parameters by FFroehlich in
https://github.com/PEtab-dev/libpetab-python/pull/83
* Adapt to Matplotlib 3.5 by dweindl in
https://github.com/PEtab-dev/libpetab-python/pull/86
* Allow specifying file format for visualization by dweindl in
https://github.com/PEtab-dev/libpetab-python/pull/85
* Visualization: Don't mess with rcParams by dweindl in
https://github.com/PEtab-dev/libpetab-python/pull/90
* Linter: Check condition IDs are unique by dweindl in
https://github.com/PEtab-dev/libpetab-python/pull/92
* Add support for `pathlib` for reading PEtab tables by dweindl, dilpath
in https://github.com/PEtab-dev/libpetab-python/pull/93,
https://github.com/PEtab-dev/libpetab-python/pull/91
* Run tests also on Python 3.10 by dweindl in
https://github.com/PEtab-dev/libpetab-python/pull/88
* Fix remote file retrieval on Windows dweindl, dilpath
in https://github.com/PEtab-dev/libpetab-python/pull/91
* Fix test suite for Windows dweindl, dilpath
in https://github.com/PEtab-dev/libpetab-python/pull/91

**Full Changelog**:
https://github.com/PEtab-dev/libpetab-python/compare/v0.1.21...v0.1.22

0.1.21

* PEtab spec compliance: measurements must now be not null, and numeric (76)
* Users who relied on null measurements for simulation/plotting are
recommended to store these dummy simulation-only measurements in an
additional file, separate to real measurements used for calibration
* Improve Unicode support (79, fixes 77)
* Convenience methods to scale or unscale a parameter vector (78)

0.1.20

* Visualization: plot additional simulation points (not only at measurements) (62), bugfix (68)
* Documentation: visualization, observables, simulation, Sphinx fixes (67)
* Lint: ensure valid parameter IDs in observable and noise parameters (69)
* Convenience method for quick export of a PEtab problem to files (71)

0.1.19

* Visualization: refactoring (58) including various bug fixes
* Validation: Fixed detection of missing observable/noise parameter overrides
(64)
* Optional relative paths in generated YAML (57)

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